Jatropha Genome Database

JcCB0645811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0645811.10 - phase: 0 /pseudo
         (103 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75220.1 | Symbols:  | integral membrane protein, putative | ...   131   8e-32
AT1G19450.1 | Symbols:  | integral membrane protein, putative / ...   130   2e-31

>AT1G75220.1 | Symbols:  | integral membrane protein, putative |
          chr1:28229412-28232606 REVERSE
          Length = 487

 Score =  131 bits (330), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 72/87 (82%)

Query: 4  REEGDDGLRKPFLHTGSWYKMGSRQSSIMGSSTQIRDGAVSVVLCVLIVALGPIQFGFTC 63
           EE  + LR+PF+HTGSWY+MGSRQSS+MGSS  IRD ++SV+ CVLIVALGPIQFGFTC
Sbjct: 7  NEEARNDLRRPFIHTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPIQFGFTC 66

Query: 64 GYSSPTQAEIIKDLKLSISEVRLIGFL 90
          GYSSPTQA I KDL L++SE  + G L
Sbjct: 67 GYSSPTQAAITKDLGLTVSEYSVFGSL 93


>AT1G19450.1 | Symbols:  | integral membrane protein, putative /
          sugar transporter family protein | chr1:6731671-6734633
          REVERSE
          Length = 488

 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 73/88 (82%)

Query: 3  SREEGDDGLRKPFLHTGSWYKMGSRQSSIMGSSTQIRDGAVSVVLCVLIVALGPIQFGFT 62
          + EEG + LR+PFLHTGSWY+MGSRQSS++ SS  IRD ++SV+ CVLIVALGPIQFGFT
Sbjct: 7  NTEEGRNDLRRPFLHTGSWYRMGSRQSSMLESSQVIRDSSISVLACVLIVALGPIQFGFT 66

Query: 63 CGYSSPTQAEIIKDLKLSISEVRLIGFL 90
          CGYSSPTQA I KDL L++SE  + G L
Sbjct: 67 CGYSSPTQAAITKDLGLTVSEYSVFGSL 94