Jatropha Genome Database

JcCB0645591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0645591.10 - phase: 0 /pseudo
         (95 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75660.1 | Symbols: XRN3 | XRN3; 5'-3' exoribonuclease | chr1...   101   7e-23
AT5G42540.1 | Symbols: XRN2 | XRN2 (EXORIBONUCLEASE 2); 5'-3' ex...    91   2e-19
AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | XRN4 (EXORIBON...    87   2e-18

>AT1G75660.1 | Symbols: XRN3 | XRN3; 5'-3' exoribonuclease |
          chr1:28408289-28414825 FORWARD
          Length = 1020

 Score =  101 bits (252), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 51/68 (75%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXXXXXXXXXNIPVDTSRPNPNSIEYDNLYLDMNGIIH 60
          MGVP+FYRWLAEKYPL                 IPVDTS+PNPN++EYDNLYLDMNGIIH
Sbjct: 1  MGVPSFYRWLAEKYPLLVADVIEEEPVEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIH 60

Query: 61 PCFHPEDR 68
          PCFHPEDR
Sbjct: 61 PCFHPEDR 68


>AT5G42540.1 | Symbols: XRN2 | XRN2 (EXORIBONUCLEASE 2); 5'-3'
          exonuclease/ 5'-3' exoribonuclease/ nucleic acid
          binding | chr5:17007513-17014534 FORWARD
          Length = 1012

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 48/70 (68%), Gaps = 2/70 (2%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXX--XXXXXXXNIPVDTSRPNPNSIEYDNLYLDMNGI 58
          MGVP+FYRWL ++YPL                   IP+D+S+PNPN  EYDNLYLDMNGI
Sbjct: 1  MGVPSFYRWLIQRYPLTIQEVIEEEPLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGI 60

Query: 59 IHPCFHPEDR 68
          IHPCFHPED+
Sbjct: 61 IHPCFHPEDK 70


>AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | XRN4
          (EXORIBONUCLEASE 4); 5'-3' exonuclease/ 5'-3'
          exoribonuclease/ nucleic acid binding |
          chr1:20350300-20356650 FORWARD
          Length = 947

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXXXXXXXXXN-IPVDTSRPNPNSIEYDNLYLDMNGII 59
          MGVPAFYRWLA++YP                 + IPVD +RPNPN  E+DNLYLDMNGII
Sbjct: 1  MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGDLIPVDITRPNPNGFEFDNLYLDMNGII 60

Query: 60 HPCFHPEDR 68
          HPCFHPE +
Sbjct: 61 HPCFHPEGK 69