Jatropha Genome Database

JcCB0644471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0644471.10 + phase: 0 /TE/partial
         (639 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Symbols:  | unknown protein | chr1:7447690-7448403...    54   3e-07

>AT1G21280.1 | Symbols:  | unknown protein | chr1:7447690-7448403
           REVERSE
          Length = 237

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 47/85 (55%)

Query: 87  EDWWTLNSMLVSWVFHTIEPTLRSTISHMENVSDLWEDIKQRFSVGNGPRVQQVRSDLAN 146
           + W   N+M++ W+ +++   L  ++ + E    +WED+++ F      ++ Q+R  LA 
Sbjct: 77  QPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLAT 136

Query: 147 CKQDGQAIVTYYSRLKTIWDELNNY 171
            +Q G ++  Y+ +L  +W EL+ Y
Sbjct: 137 LRQGGDSVEEYFGKLSKVWMELSEY 161