Jatropha Genome Database

JcCB0644101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0644101.10 + phase: 1 /partial
         (213 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13700.1 | Symbols: ATPAO1, APAO, PAO1 | ATPAO1 (ARABIDOPSIS ...   108   2e-24

>AT5G13700.1 | Symbols: ATPAO1, APAO, PAO1 | ATPAO1 (ARABIDOPSIS
           THALIANA POLYAMINE OXIDASE 1); FAD binding / polyamine
           oxidase | chr5:4420222-4422974 REVERSE
          Length = 472

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 22/213 (10%)

Query: 5   KSIHEAGIQDILILEASHRIGGRLMKTQFSGLTVEKGANWLFG-GGPVFNPXXXXXXXXX 63
           K + E G++D+LILEA+ RIGGR+ K  F  + VE GA W+ G GG   NP         
Sbjct: 20  KVLVENGVEDVLILEATDRIGGRIHKQNFGDVPVELGAGWIAGVGGKESNPVWELASRFN 79

Query: 64  XXXXXNDYQNITSNTYKQNGGLYPKQVVEKIDKVATAMDDFCAAFSKKLSVQKKDIDVSI 123
                +DY N   N Y ++G ++P  +    D    A+D      S  L ++  +   S 
Sbjct: 80  LRTCFSDYTNARFNIYDRSGKIFPTGIAS--DSYKKAVD------SAILKLKSLEAQCSG 131

Query: 124 LAAQRIFKKAPTSPLEMVIDYYHNDFEDAEPPKVTSLKHTYPRNELVDHGEDEYFVADPR 183
             A+     +P +P+E+ ID+  +DFE AE           P +  VD GE E+ VAD R
Sbjct: 132 QVAEEA-PSSPKTPIELAIDFILHDFEMAE---------VEPISTYVDFGEREFLVADER 181

Query: 184 GFEIIVQYLAKQFLSSL---TKDPRLKLNKVIR 213
           G+E ++  +A++FL +      D RLKLN+V+R
Sbjct: 182 GYECLLYKMAEEFLVTSHGNILDYRLKLNQVVR 214