Jatropha Genome Database

JcCB0638431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0638431.10 + phase: 2 /partial
         (161 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39080.1 | Symbols:  | binding / catalytic | chr2:16309981-16...   204   1e-53

>AT2G39080.1 | Symbols:  | binding / catalytic |
           chr2:16309981-16312475 REVERSE
          Length = 351

 Score =  204 bits (520), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/147 (68%), Positives = 111/147 (75%), Gaps = 13/147 (8%)

Query: 2   AALSWNGEGSFLFTSSSAPYDCNDNGECDEDSPAVPIGRSPRTDVLLNAEKVVLESNGCA 61
           AA +WNGEGSFLFTSSSAPYDC DNGEC+EDSP VP+G+SPRTDVLL AEKVVLE  G  
Sbjct: 169 AASNWNGEGSFLFTSSSAPYDCFDNGECNEDSPVVPLGKSPRTDVLLKAEKVVLECGGTV 228

Query: 62  DSLGFDISSVISKTLINWPYKADRGAHVYWLEKGTVEVRPDHILNLIHYEDAASLSIAIL 121
             L                Y   RGAH YWL K T++ RPDHILNLIHYEDAASL++AI+
Sbjct: 229 LRLA-------------GLYTETRGAHTYWLSKETIDARPDHILNLIHYEDAASLAVAIM 275

Query: 122 KKKFRGQIFLGCDNHPLSRQEVMDLVA 148
           KKK   +IFLGCDNHPLSRQEVMDL+A
Sbjct: 276 KKKAGARIFLGCDNHPLSRQEVMDLMA 302