Jatropha Genome Database

JcCB0635861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0635861.10 - phase: 1 /partial
         (323 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17610.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) fam...   252   2e-67

>AT4G17610.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) family
           protein | chr4:9805652-9814910 REVERSE
          Length = 1850

 Score =  252 bits (644), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 165/410 (40%), Positives = 214/410 (52%), Gaps = 101/410 (24%)

Query: 4   VLEATLVPFFLRSAGLSVGMSQNEESDIFEWDQYSVLQGLDGMIDNLNLDKEFILSLSGS 63
           +L  +LVPF LRS G S+GM Q+EESD  +W    +   L+     +++D+ +I  LSGS
Sbjct: 136 MLGVSLVPFLLRSVGFSMGMRQHEESDFIKWGDLCLRDSLN----TIDMDENYIAQLSGS 191

Query: 64  FPLSISCHVLTLILDSALQSFQAA---------------STTESML----ENDSCYADQL 104
           FP+ +SCH+L LIL++A QS QAA               +TTE +L    E+ SC    L
Sbjct: 192 FPIPLSCHLLNLILNAAFQSHQAAPKVESFAAGMLWDLCNTTERLLSQSVEHRSCAVSFL 251

Query: 105 -----------------------------FSKLLWDLCNMSERLFS-RSLEHRSC----- 129
                                        F K +W+ C   ++LFS  S+E R       
Sbjct: 252 LPAIFKAFSSQSSLKISHQGNLFILSRNGFIKRIWECC---KKLFSVGSIERRDAYSVLS 308

Query: 130 --------------------AISFLLP-------------VDEESLVRKQSLHILKRVLQ 156
                               A+ F L              V +ESLVRKQSLHILK VL 
Sbjct: 309 LCLSSGSWTDGTESFVSEKDAVQFDLRSEQEFWDEIKIGLVVDESLVRKQSLHILKSVLS 368

Query: 157 ISEEGQRNSFVPEKKSREKHSVPHGMTKREMWANKEAKSLGVGEICSSIDSPLDIQQQWE 216
           I E  +    + EKK  E +SV   MT++E WA KEAKSLGVGE+  S+DS L  QQ W+
Sbjct: 369 IIEVSET---ISEKKP-EGNSVNRSMTRKETWAEKEAKSLGVGELYGSVDSGLTSQQGWQ 424

Query: 217 AFILQYEMLEEYGTHLVEAAWDHQITLLLQFSVSRDNFASSICGRVCQSEVEDLGE---V 273
           AF+L YEMLEEYGTHLVEAAW +QI LL++ S+  D    S C       +E   E   +
Sbjct: 425 AFLLLYEMLEEYGTHLVEAAWSNQIDLLIKSSLRYDGTLKSDCNNSHHGHMETPDEEAKI 484

Query: 274 FTWLTILWQLGFRHDNPQVRCLIMQSFLGIEWMEYGDAAKSVQRSFVLGP 323
           F WL +LW  GFRHDNP VRC +M+SF GIEW  Y    +S+ ++FVLGP
Sbjct: 485 FNWLEVLWNRGFRHDNPLVRCTVMESFFGIEWRRYKTCTQSMSQTFVLGP 534