Jatropha Genome Database

JcCB0631101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0631101.10 + phase: 0 /pseudo
         (129 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34140.1 | Symbols:  | nucleic acid binding | chr4:16350942-1...    74   3e-14

>AT4G34140.1 | Symbols:  | nucleic acid binding |
           chr4:16350942-16354022 FORWARD
          Length = 530

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 37/50 (74%)

Query: 56  SFIWDETSQLYFHSRSGIYHDPNGGWYYSSRDGLYYKFENGSYVLLESDK 105
           S++WD  +QLY H  SG YHDPN GWYY S+DG YYK ENG YV LE D+
Sbjct: 16  SYVWDSDTQLYIHHSSGFYHDPNAGWYYCSKDGRYYKHENGEYVPLEYDE 65