Jatropha Genome Database

JcCB0627221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0627221.10 - phase: 2 /partial
         (298 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21200.1 | Symbols:  | transcription factor | chr1:7421483-74...   367   e-102
AT1G76870.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   298   3e-81
AT3G10040.1 | Symbols:  | transcription factor | chr3:3096580-30...   152   2e-37

>AT1G21200.1 | Symbols:  | transcription factor |
           chr1:7421483-7422814 FORWARD
          Length = 443

 Score =  367 bits (942), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/300 (65%), Positives = 224/300 (74%), Gaps = 6/300 (2%)

Query: 3   KGSPWQRVKWTDKMVRLLITAVSYIGEDVTSDCGGGMRRKFAVLQKKGKWKSVSKVMAER 62
           KGSPWQRVKWTDKMV+LLITAVSYIG+D + D     RRKFAVLQKKGKWKSVSKVMAER
Sbjct: 110 KGSPWQRVKWTDKMVKLLITAVSYIGDDSSIDSS--SRRKFAVLQKKGKWKSVSKVMAER 167

Query: 63  GHHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLEYID-LSEKEKEDVRKIL 121
           G+HVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALL+ I  L++KEK+DVRKI+
Sbjct: 168 GYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDSIGYLNDKEKDDVRKIM 227

Query: 122 SSKHLFYEEMCSYHNANRLHLPHDPALQRSLQLALRSKXXXXXXXXXXXXXXXXXXXXXX 181
           SSKHLFYEEMCSYHN NRLHLPHD ALQRSLQLALRS+                      
Sbjct: 228 SSKHLFYEEMCSYHNGNRLHLPHDLALQRSLQLALRSRDDHDNDDSRKHQMEDLDDEDHD 287

Query: 182 XXXXXXXXFEENHPSRGDSK-GFYGALGGSMKRLRPGLGHEDACFGN--SSQDGNKGSYS 238
                   +EE H + GD +   YG  GG +K++RP L HED    +  +S + NK S  
Sbjct: 288 GDGDEHDEYEEQHYAYGDCRVNHYGGGGGPLKKIRPSLSHEDGDHPSHVNSLECNKVSLP 347

Query: 239 HVQIPQVDMNQISPESSRAAWLQKQWMESRSLQLEEQKVQIQLEMLELEKQRFKWKRFSR 298
            +   Q D+NQ   ES RA  +QKQWMESR+LQLEEQK+QIQ+E+LELEKQRF+W+RFS+
Sbjct: 348 QIPFSQADVNQGGAESGRAGSVQKQWMESRTLQLEEQKLQIQVELLELEKQRFRWQRFSK 407


>AT1G76870.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 16 plant
           structures; EXPRESSED DURING: 11 growth stages; BEST
           Arabidopsis thaliana protein match is: transcription
           factor (TAIR:AT1G21200.1); Has 324 Blast hits to 269
           proteins in 64 species: Archae - 0; Bacteria - 2;
           Metazoa - 125; Fungi - 12; Plants - 63; Viruses - 0;
           Other Eukaryotes - 122 (source: NCBI BLink). |
           chr1:28857250-28858407 FORWARD
          Length = 385

 Score =  298 bits (763), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 171/303 (56%), Positives = 207/303 (68%), Gaps = 37/303 (12%)

Query: 2   KKGSPWQRVKWTDKMVRLLITAVSYIGEDVTSDCGGGMRRKFAVLQKKGKWKSVSKVMAE 61
           K+ SPWQRVKW DKMV+L+ITA+SYIGED  SD      +KFAVLQKKGKW+SVSKVM E
Sbjct: 78  KENSPWQRVKWMDKMVKLMITALSYIGEDSGSD------KKFAVLQKKGKWRSVSKVMDE 131

Query: 62  RGHHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLEYID-LSEKEKEDVRKI 120
           RG+HVSPQQCEDKFNDLNKRYKKLN+MLGRGTSC+VVENP+LL+ ID L+EKEK++VR+I
Sbjct: 132 RGYHVSPQQCEDKFNDLNKRYKKLNEMLGRGTSCEVVENPSLLDKIDYLNEKEKDEVRRI 191

Query: 121 LSSKHLFYEEMCSYHNANRLHLPHDPALQRSLQL-ALRSKXXXXXXXXXXXXXXXXXXXX 179
           +SSKHLFYEEMCSYHN NRLHLPHDPA+QRSL L  L S+                    
Sbjct: 192 MSSKHLFYEEMCSYHNGNRLHLPHDPAVQRSLHLITLGSRDDHDNDEHGKHQNEDLDDDD 251

Query: 180 XXXXXXXXXXFEENHPSRGDSKGFYGALGG-SMKRLRPGLGHEDACFGNSSQDGNKGSYS 238
                                +   GAL    +KRLR    HED          NKG Y 
Sbjct: 252 DY------------------EEDHDGALSDRPLKRLRQSQSHEDVGH------PNKG-YD 286

Query: 239 HVQIP--QVDMNQ-ISPESSRAAWLQKQWMESRSLQLEEQKVQIQLEMLELEKQRFKWKR 295
              +P  Q D+N+ IS +S +AA LQ+Q +ES+SL+LE +K+QIQ EM+ELE+Q+FKW+ 
Sbjct: 287 VPCLPRSQADVNRGISLDSRKAAGLQRQQIESKSLELEGRKLQIQAEMMELERQQFKWEV 346

Query: 296 FSR 298
           FS+
Sbjct: 347 FSK 349


>AT3G10040.1 | Symbols:  | transcription factor |
           chr3:3096580-3097875 REVERSE
          Length = 431

 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 118/171 (69%), Gaps = 13/171 (7%)

Query: 2   KKGSPWQRVKWTDKMVRLLITAVSYIGEDV----------TSDCGGGMRRKFAVLQKKGK 51
           +K S W R+KWTD MVRLLI AV YIG++            +  GGG      +LQKKGK
Sbjct: 96  RKLSQWHRMKWTDTMVRLLIMAVFYIGDEAGLNDPVDAKKKTGGGGGGGGGGGMLQKKGK 155

Query: 52  WKSVSKVMAERGHHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLEYID-LS 110
           WKSVS+ M E+G  VSPQQCEDKFNDLNKRYK++ND+LG+G +C+VVEN  LLE +D L+
Sbjct: 156 WKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGIACRVVENQGLLESMDHLT 215

Query: 111 EKEKEDVRKILSSKHLFYEEMCSYHNANRLHLPHD--PALQRSLQLALRSK 159
            K K++V+K+L+SKHLF+ EMC+YHN+      HD  P  Q  + + + S+
Sbjct: 216 PKLKDEVKKLLNSKHLFFREMCAYHNSCGHLGGHDQQPPQQNPISIPIPSQ 266