Jatropha Genome Database
- JcCB0615491.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0615491.10 + phase: 0 /pseudo/partial
(295 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G12400.1 | Symbols: | PHD finger transcription factor, putat... 220 9e-58
AT5G22760.1 | Symbols: | PHD finger family protein | chr5:75716... 91 8e-19
AT5G35210.1 | Symbols: | peptidase M50 family protein / sterol-... 72 6e-13
AT5G35210.2 | Symbols: | peptidase M50 family protein / sterol-... 71 1e-12
>AT5G12400.1 | Symbols: | PHD finger transcription factor, putative |
chr5:4013813-4020909 FORWARD
Length = 1595
Score = 220 bits (560), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 164/266 (61%), Gaps = 9/266 (3%)
Query: 1 GYLNFYSFGHIASSVAEELMRKTSDKAIEDPIKSDEEIISAQMKIISKKTAKFRWPNIPR 60
GY N Y F + SV EE++RK+ + + ++SDEEI S Q++ I KT KF+W NI
Sbjct: 877 GYRNQYIFAQMTRSVYEEMIRKSPIRT--NDMRSDEEIASTQVRTILMKTTKFQWRNIQS 934
Query: 61 LNANVHKEKCGWCYCCRVSSDDLG----CLFNVCLGPVQAGSVDEVVGLQSKRNKKADFT 116
L + KE CGWC+ C+ SS+D G CLFN+ LG ++ S EV +QS K +
Sbjct: 935 LYLDAWKENCGWCHSCKNSSEDAGTEINCLFNMSLGALRGLSESEVANIQS-FEKNSHLL 993
Query: 117 DLISYXXXXXXXXXXXXXXPWLNPHYSKLWCKSVLRASDIVSVKSLLLTLESNLHRLALS 176
+I PWLNP +S W + +L+AS+I S+K LL+ ++NLH LS
Sbjct: 994 AIICQILSLESRLQGLLVGPWLNPQHSSFWREHILKASNISSLKHLLV--DANLHHRVLS 1051
Query: 177 AEWLKYVDSAATMGSASHIVIASSRASSKNGIGRKRARYSELDSNPSLNSASGLGMLWWR 236
EWL +VD+A MGSA HI+IAS+R+ SK IG++R + NP+ GL M WWR
Sbjct: 1052 LEWLSHVDAAVVMGSAIHILIASTRSWSKTAIGKRRGTLLDSGVNPTAKKNGGLTMCWWR 1111
Query: 237 GGRISRRLFSWKILPSSLVSKAARRG 262
GG++SRRLF+WK+LP +L+SKAAR+G
Sbjct: 1112 GGQLSRRLFNWKVLPRALISKAARQG 1137
>AT5G22760.1 | Symbols: | PHD finger family protein |
chr5:7571635-7577662 FORWARD
Length = 1566
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 129/288 (44%), Gaps = 19/288 (6%)
Query: 2 YLNFYSFGHIASSVAEELMRKTSDKAIEDPI-------KSDEEIISAQMKIISKKTAKFR 54
Y+N Y+ G +A+S A L S++ E + K+ I QMK S + F
Sbjct: 634 YINHYTNGELAASAAATLAILMSEETHEPDLHKFSNAKKAASSNILLQMKAFSIVASSFF 693
Query: 55 WPNIPRLNANVHKEKCGWCYCCRVSS-DDLGCLFNVCLGPVQAGSVDEVVGLQSKRNKKA 113
WP+ + + +E+CGWC+ C+++S GC+ N + ++ GL +N +
Sbjct: 694 WPSPDK--KEITRERCGWCHSCKLTSASRRGCMLNAAVTGATKSAMKIYSGLFPLKNGEG 751
Query: 114 DFTDLISYXXXXXXXXXXXXXXPWLNPHYSKLWCKSVLRASDIVSVKSLLLTLESNLHRL 173
+ + +Y P+L+ W K + AS ++K+LLL LE N+ +
Sbjct: 752 VLSRIAAYALYLEESLRGLIAGPFLSESLRYQWRKKLEEASTCKAMKALLLELEENICSI 811
Query: 174 ALSAEWLKYVDSAATMGSASHIVIASSRASSKNGIGRKRARYSELDSNPSLNSASGL--- 230
ALS++WLK +D S + A+ K GR++ R N + N+A G
Sbjct: 812 ALSSDWLKLMDDWLIELSIFQSAPVTVGATQKRRPGRRKQR------NQAENTAQGSDDD 865
Query: 231 GMLWWRGGRISRRLFSWKILPSSLVSKAARRGLXSFFSVFYMNSGRIV 278
WWRGG++S+ + +L + KAA +G F F G +
Sbjct: 866 SFTWWRGGKLSKIILLKAVLSKPKIKKAAWQGGTKKFPEFNYGDGSYI 913
>AT5G35210.1 | Symbols: | peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein | chr5:13474499-13482238 REVERSE
Length = 1576
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 22/225 (9%)
Query: 39 ISAQMKIISKKTAKFRWPNIPRLNANVHKEKCGWCYCCRVSS-DDLGCLFNVCLGPVQAG 97
I QMK S +F WP+ + + +E+CGWC+ CR++S GC+ N + G
Sbjct: 695 ILEQMKAFSLVAPRFFWPSPDK--KEITRERCGWCHSCRLTSASRRGCMLNAAVAGATKG 752
Query: 98 SVDEVVGLQSKRNKKADFTDLISYXXXXXXXXXXXXXXPWLNPHYSKLWCKSVLRASDIV 157
++ GL +N + + + +Y P+L+ K W K
Sbjct: 753 AMKIFSGLFPLKNGEGVLSSIAAYILYLEESLRGLIAGPFLSESPRKQWRKQ-------- 804
Query: 158 SVKSLLLTLESNLHRLALSAEWLKYVDSAATMGSASHIVIASSRASSKNGIGRKRARYSE 217
LE N+ +ALS +W K +D S + + G GR +
Sbjct: 805 --------LEENICSIALSCDWFKQMDDWLIEHSIFQSAPVTLGVPQRRGPGRTK---QN 853
Query: 218 LDSNPSLNSASGLGMLWWRGGRISRRLFSWKILPSSLVSKAARRG 262
+ + + WWRGG++S+ + +L KAA +G
Sbjct: 854 TQAEVTAEGSDADSFTWWRGGKLSKVILLKAVLSQPATKKAAWQG 898
>AT5G35210.2 | Symbols: | peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein | chr5:13476213-13482238 REVERSE
Length = 1409
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 22/225 (9%)
Query: 39 ISAQMKIISKKTAKFRWPNIPRLNANVHKEKCGWCYCCRVSS-DDLGCLFNVCLGPVQAG 97
I QMK S +F WP+ + + +E+CGWC+ CR++S GC+ N + G
Sbjct: 695 ILEQMKAFSLVAPRFFWPSPDK--KEITRERCGWCHSCRLTSASRRGCMLNAAVAGATKG 752
Query: 98 SVDEVVGLQSKRNKKADFTDLISYXXXXXXXXXXXXXXPWLNPHYSKLWCKSVLRASDIV 157
++ GL +N + + + +Y P+L+ K W K
Sbjct: 753 AMKIFSGLFPLKNGEGVLSSIAAYILYLEESLRGLIAGPFLSESPRKQWRKQ-------- 804
Query: 158 SVKSLLLTLESNLHRLALSAEWLKYVDSAATMGSASHIVIASSRASSKNGIGRKRARYSE 217
LE N+ +ALS +W K +D S + + G GR +
Sbjct: 805 --------LEENICSIALSCDWFKQMDDWLIEHSIFQSAPVTLGVPQRRGPGRTK---QN 853
Query: 218 LDSNPSLNSASGLGMLWWRGGRISRRLFSWKILPSSLVSKAARRG 262
+ + + WWRGG++S+ + +L KAA +G
Sbjct: 854 TQAEVTAEGSDADSFTWWRGGKLSKVILLKAVLSQPATKKAAWQG 898