Jatropha Genome Database
- JcCB0611681.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0611681.10 - phase: 1 /pseudo/partial
(125 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G51690.1 | Symbols: ATB ALPHA | ATB ALPHA; nucleotide binding... 120 3e-28
AT1G51690.2 | Symbols: ATB ALPHA | ATB ALPHA; nucleotide binding... 119 3e-28
AT1G17720.2 | Symbols: ATB BETA | ATB BETA; nucleotide binding /... 114 1e-26
AT1G17720.1 | Symbols: ATB BETA | ATB BETA; nucleotide binding /... 114 1e-26
>AT1G51690.1 | Symbols: ATB ALPHA | ATB ALPHA; nucleotide binding /
protein phosphatase type 2A regulator |
chr1:19166218-19169974 FORWARD
Length = 513
Score = 120 bits (300), Expect = 3e-28, Method: Composition-based stats.
Identities = 64/116 (55%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 10 FHMYLSQFDYLKSLKIEEKINKIRWCQTANGALFLLSTNDKTIXXXXXXXXXXXXISDMN 69
F + +FDYLKSL+IEEKINKIRWCQTANGALFLLSTNDKTI I DMN
Sbjct: 98 FQSHDPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQDKKIKKICDMN 157
Query: 70 VDPSKALGNGXXXXXXXXXXXKPYIANGGWPEKSYSCPSNDFTFPPGGIPSLRLPV 125
DPS+ +GNG + NGG E + S NDF+ P GGI SLRLPV
Sbjct: 158 SDPSRTVGNGTVASSSNSNITNSCLVNGGVSEVNNSL-CNDFSLPAGGISSLRLPV 212
>AT1G51690.2 | Symbols: ATB ALPHA | ATB ALPHA; nucleotide binding /
protein phosphatase type 2A regulator |
chr1:19166218-19169974 FORWARD
Length = 512
Score = 119 bits (299), Expect = 3e-28, Method: Composition-based stats.
Identities = 64/116 (55%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 10 FHMYLSQFDYLKSLKIEEKINKIRWCQTANGALFLLSTNDKTIXXXXXXXXXXXXISDMN 69
F + +FDYLKSL+IEEKINKIRWCQTANGALFLLSTNDKTI I DMN
Sbjct: 98 FQSHDPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQDKKIKKICDMN 157
Query: 70 VDPSKALGNGXXXXXXXXXXXKPYIANGGWPEKSYSCPSNDFTFPPGGIPSLRLPV 125
DPS+ +GNG + NGG E + S NDF+ P GGI SLRLPV
Sbjct: 158 SDPSRTVGNGTVASSSNSNITNSCLVNGGVSEVNNSL-CNDFSLPAGGISSLRLPV 212
>AT1G17720.2 | Symbols: ATB BETA | ATB BETA; nucleotide binding /
protein phosphatase type 2A regulator |
chr1:6093949-6098065 REVERSE
Length = 500
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 73/117 (62%), Gaps = 13/117 (11%)
Query: 10 FHMYLSQFDYLKSLKIEEKINKIRWCQTANGALFLLSTNDKTIXXXXXXXXXXXXISDMN 69
F + +FDYLKSL+IEEKINKIRWCQ ANGALFLLSTNDKTI IS+MN
Sbjct: 96 FQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMN 155
Query: 70 VDPSKALGNGXXXXXXXXXXXKPYIANGGWP-EKSYSCPSNDFTFPPGGIPSLRLPV 125
+DPS++ P + G P +K + S DF+FPPGGIPSLRLPV
Sbjct: 156 IDPSES------------SNIPPQLVTNGLPADKGHDYLSKDFSFPPGGIPSLRLPV 200
>AT1G17720.1 | Symbols: ATB BETA | ATB BETA; nucleotide binding /
protein phosphatase type 2A regulator |
chr1:6093949-6098065 REVERSE
Length = 501
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 73/117 (62%), Gaps = 13/117 (11%)
Query: 10 FHMYLSQFDYLKSLKIEEKINKIRWCQTANGALFLLSTNDKTIXXXXXXXXXXXXISDMN 69
F + +FDYLKSL+IEEKINKIRWCQ ANGALFLLSTNDKTI IS+MN
Sbjct: 96 FQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMN 155
Query: 70 VDPSKALGNGXXXXXXXXXXXKPYIANGGWP-EKSYSCPSNDFTFPPGGIPSLRLPV 125
+DPS++ P + G P +K + S DF+FPPGGIPSLRLPV
Sbjct: 156 IDPSES------------SNIPPQLVTNGLPADKGHDYLSKDFSFPPGGIPSLRLPV 200