Jatropha Genome Database

JcCB0607681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0607681.10 - phase: 0 /pseudo/partial
         (246 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60060.1 | Symbols:  | unknown protein | chr1:22139282-221415...    69   4e-12

>AT1G60060.1 | Symbols:  | unknown protein | chr1:22139282-22141585
           FORWARD
          Length = 386

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 78/151 (51%), Gaps = 26/151 (17%)

Query: 25  QTIAIIAVREGIIQLGSFDKIAEDLNLVINVQRKFSYLQSIPGVFAMQRPYLPIQHPYIL 84
           +TIA+I+VREG++QLG+  K+ EDL+ V+ +++K SY++SIPGV               L
Sbjct: 174 KTIALISVREGVVQLGAVHKVIEDLSYVVMLRKKLSYIESIPGV---------------L 218

Query: 85  KPNTRTIESEEIGFSVDDKRQITGV-------KRLFDESFDDSPLKSINLGLNSPQN-GI 136
            P+  +     I  S  D     GV       +  F  S  D   + +    N PQ  G 
Sbjct: 219 LPHPSSSGYPFINASPSDTWHFPGVAPPHQQPEHQFYHS--DHNHRFLIGHHNQPQAVGG 276

Query: 137 TGPPIWSIPPLLPTMSCSLGALLSRLPSVIP 167
             PP+     + P+MS SL ALLS+LPSV+P
Sbjct: 277 AAPPLPLSMKITPSMS-SLEALLSKLPSVVP 306