Jatropha Genome Database

JcCB0603751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0603751.10 - phase: 0 /partial
         (141 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62790.1 | Symbols: DXR, PDE129 | DXR (1-DEOXY-D-XYLULOSE 5-P...   274   1e-74

>AT5G62790.1 | Symbols: DXR, PDE129 | DXR (1-DEOXY-D-XYLULOSE
           5-PHOSPHATE REDUCTOISOMERASE);
           1-deoxy-D-xylulose-5-phosphate reductoisomerase |
           chr5:25214358-25217292 REVERSE
          Length = 477

 Score =  274 bits (700), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 127/138 (92%), Positives = 134/138 (97%)

Query: 4   GLEVIEAHYLLGADYDNIEIVIHPQSIIHSMVETEDSSVLAQLGWPDMRLPILYTMSWPD 63
           GLEVIEAHYL GA+YD+IEIVIHPQSIIHSM+ET+DSSVLAQLGWPDMRLPILYTMSWPD
Sbjct: 298 GLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTMSWPD 357

Query: 64  RISCSEITWPRLDLCKQGSLTFKAPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEM 123
           R+ CSE+TWPRLDLCK GSLTFK PDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEM
Sbjct: 358 RVPCSEVTWPRLDLCKLGSLTFKKPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEM 417

Query: 124 FIDEKISYLDIFKIVELT 141
           FIDEKISYLDIFK+VELT
Sbjct: 418 FIDEKISYLDIFKVVELT 435