Jatropha Genome Database

JcCB0603701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0603701.10 - phase: 0 /partial
         (136 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48850.1 | Symbols: ATSDI1 | ATSDI1 (SULPHUR DEFICIENCY-INDUC...   147   1e-36
AT1G04770.1 | Symbols:  | male sterility MS5 family protein | ch...   129   4e-31
AT3G51280.1 | Symbols:  | male sterility MS5, putative | chr3:19...    83   6e-17
AT5G44330.1 | Symbols:  | male sterility MS5 family protein | ch...    65   1e-11
AT4G20900.1 | Symbols: MS5, TDM1 | MS5 (MALE-STERILE 5) | chr4:1...    58   2e-09

>AT5G48850.1 | Symbols: ATSDI1 | ATSDI1 (SULPHUR DEFICIENCY-INDUCED
           1); binding | chr5:19805576-19807699 REVERSE
          Length = 306

 Score =  147 bits (372), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/139 (57%), Positives = 106/139 (76%), Gaps = 6/139 (4%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQNVMEGR 60
           GNLGWAYMQ++ +L+AEAVY+KAQM++PDANK+CNL +CLIKQ RF+E + VL +V+E R
Sbjct: 171 GNLGWAYMQQAKYLSAEAVYRKAQMVEPDANKSCNLAMCLIKQGRFEEGRLVLDDVLEYR 230

Query: 61  YPGSEDIKSIKRAQELLREVETKMP---SPELTGILGFNLDDHDFVKGLEEMMEEWAPAR 117
             G++D ++ +RA+ELL E+E+ +P     E+  +LG  LDD DFV GLEEM       +
Sbjct: 231 VLGADDCRTRQRAEELLSELESSLPRMRDAEMEDVLGNILDD-DFVLGLEEMTS--TSFK 287

Query: 118 SKRLPIFEQISSFRDQLAC 136
           SKRLPIFEQISSFR+ L C
Sbjct: 288 SKRLPIFEQISSFRNTLVC 306


>AT1G04770.1 | Symbols:  | male sterility MS5 family protein |
           chr1:1336564-1337767 REVERSE
          Length = 303

 Score =  129 bits (325), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 97/140 (69%), Gaps = 4/140 (2%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVL-QNVMEG 59
           GNLGWAYMQ  ++ AAEAVY+KAQ+I+PDANKACNL  CLIKQ + DEA+ +L ++V+  
Sbjct: 164 GNLGWAYMQLMDYTAAEAVYRKAQLIEPDANKACNLCTCLIKQGKHDEARSILFRDVLME 223

Query: 60  RYPGSEDIKSIKRAQELLREV--ETKMPSPELTGILGFNLDDHDFVKGLEEMMEEW-APA 116
              GS D + + R QELL E+  + +  +  ++      +D+   V+GL+E ++EW  P 
Sbjct: 224 NKEGSGDPRLMARVQELLSELKPQEEEAAASVSVECEVGIDEIAVVEGLDEFVKEWRRPY 283

Query: 117 RSKRLPIFEQISSFRDQLAC 136
           R++RLPIFE+I   RDQLAC
Sbjct: 284 RTRRLPIFEEILPLRDQLAC 303


>AT3G51280.1 | Symbols:  | male sterility MS5, putative |
           chr3:19037229-19038781 FORWARD
          Length = 430

 Score = 82.8 bits (203), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 59/88 (67%), Gaps = 4/88 (4%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQN----V 56
           GNLGWA MQ+ NF+ AE  Y++A  I PD NK CNLG+CL+KQ R DEA+  L+     V
Sbjct: 174 GNLGWALMQRDNFVEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIDEAKETLRRVKPAV 233

Query: 57  MEGRYPGSEDIKSIKRAQELLREVETKM 84
           ++G       +K+ +RAQ++L ++ ++M
Sbjct: 234 VDGPRGVDSHLKAYERAQQMLNDLGSEM 261


>AT5G44330.1 | Symbols:  | male sterility MS5 family protein |
           chr5:17857325-17859056 FORWARD
          Length = 469

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 5/93 (5%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQNVMEG- 59
           GNL W ++Q  N+  AE  Y+ A  ++PD NK CNL +CLI+  R  EA+ +L++V +  
Sbjct: 188 GNLAWVHLQLHNYGIAEQYYRNALSLEPDNNKLCNLAICLIRMERTHEAKSLLEDVKQSL 247

Query: 60  --RYPGSEDIKSIKRAQELL--REVETKMPSPE 88
             ++      KS +RA E+L  RE  T    PE
Sbjct: 248 GNQWKNEPFCKSFERATEMLAEREQATVADKPE 280


>AT4G20900.1 | Symbols: MS5, TDM1 | MS5 (MALE-STERILE 5) |
           chr4:11184103-11185844 REVERSE
          Length = 450

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 24/112 (21%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQ----------------KAQMIDPDANKACNLGLCLIKQA 44
           GNLGW ++Q  N+  AE  Y+                +A  ++ D NK CNL +CL++ +
Sbjct: 195 GNLGWVHLQLHNYGIAEQHYRFGFVTKIPNIDYCLVMRALGLERDKNKLCNLAICLMRMS 254

Query: 45  RFDEAQFVLQNVMEGRYPGSEDI------KSIKRAQELLREVETKMPSPELT 90
           R  EA+ +L +V +   P   +       KS  RA E+L E+E+K P  +L+
Sbjct: 255 RIPEAKSLLDDVRDS--PAESECGDEPFAKSYDRAVEMLAEIESKKPEADLS 304