Jatropha Genome Database

JcCB0601151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0601151.10 + phase: 1 /pseudo/partial
         (183 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56090.1 | Symbols:  | tetratricopeptide repeat (TPR)-contain...    61   3e-10

>AT1G56090.1 | Symbols:  | tetratricopeptide repeat (TPR)-containing
           protein | chr1:20977989-20979185 REVERSE
          Length = 272

 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 117 EVIAQAQRKKESSDQHSKAWQAIPKPKGHSTLDYARWDRVXXXXXXXXXXXXXXXXXQ-- 174
           EV  Q  ++   S + S AWQAIPKPKGHSTLDYARW+ V                 +  
Sbjct: 197 EVREQNSKEVPMSGKQSNAWQAIPKPKGHSTLDYARWNTVEDDSSEEEDDEDSDDSDESP 256

Query: 175 PQYRFRVRT 183
           PQYRFRV+T
Sbjct: 257 PQYRFRVKT 265