Jatropha Genome Database

JcCB0599321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0599321.10 + phase: 0 /partial
         (108 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38780.1 | Symbols:  | unknown protein | chr2:16210864-162141...   114   1e-26

>AT2G38780.1 | Symbols:  | unknown protein | chr2:16210864-16214110
           FORWARD
          Length = 465

 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 5/105 (4%)

Query: 4   RPNEARAMYEKLQSHSSPKVSKKARQFMFSFQAMEMMKVTGSNFSPKSTGYRKYFEKFID 63
           + ++AR MYEKL SH +P VSKKARQFMFSFQAMEM+KV GS+F+  +TGY+ YFE F++
Sbjct: 360 KTDKARRMYEKLISHPNPGVSKKARQFMFSFQAMEMLKVKGSSFAEGNTGYQDYFEAFVE 419

Query: 64  DNVTNYLVEEAESRG---ALSEALPYMVFLVSPIFIVLFIAVQRG 105
           D  TNY  +E E  G    ++E L Y++ L SPI +V  +A QRG
Sbjct: 420 DK-TNYKAQE-EKEGEEMGINETLLYVILLASPILMVFIVAAQRG 462