Jatropha Genome Database

JcCB0597261.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0597261.20 + phase: 0 /partial
         (82 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14910.1 | Symbols:  | unknown protein | chr3:5015432-5017566...   125   7e-30

>AT3G14910.1 | Symbols:  | unknown protein | chr3:5015432-5017566
          FORWARD
          Length = 455

 Score =  125 bits (313), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 72/82 (87%), Gaps = 2/82 (2%)

Query: 3  SKRNHTTELGCIACEELSDVGAGKEGWLVDNPSLLCALDTHSIALANRSLILITGWD--D 60
          +KR H TELGCIACEEL+++GAGKEGWLV+NP+LL ALD+HS+ALANR LILI  W   D
Sbjct: 2  AKRIHLTELGCIACEELTELGAGKEGWLVNNPNLLSALDSHSLALANRFLILIVNWGDPD 61

Query: 61 GPRLKIRPNLSPIESESITALE 82
           PR+KIRP+LSPIE+ESITA+E
Sbjct: 62 APRVKIRPDLSPIEAESITAIE 83