Jatropha Genome Database

JcCB0597261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0597261.10 - phase: 0 /partial
         (180 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14900.1 | Symbols:  | unknown protein | chr3:5013442-5015277...   169   9e-43

>AT3G14900.1 | Symbols:  | unknown protein | chr3:5013442-5015277
           REVERSE
          Length = 611

 Score =  169 bits (428), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 99/208 (47%), Positives = 125/208 (60%), Gaps = 29/208 (13%)

Query: 1   MAQDLSFSKALTPNVSLFPQRPKTLVLKPQLLFTPSLSHQN---------------ASFR 45
           ++QDLSFSK L P+ S F + P    ++  +   P+++ +N                 FR
Sbjct: 2   LSQDLSFSKTLNPSFS-FRKSPLNSGVRRIVSVLPAITERNYAFSVKRSELLLREDGGFR 60

Query: 46  RETRAFAGRSKNKQGP-----RIDLDPGYLXXXXXXXXXXXXXLSESLFYRI-KNPHKI- 98
           R+ RA AGRSK K G      RI+ D                 L+ESLFYR+  NP K  
Sbjct: 61  RDVRALAGRSKKKLGGGSSGGRIEGDSDMRKQVKRNAREKSKKLAESLFYRLYNNPDKSR 120

Query: 99  ------HADNFTEEELNLIGLGYDRMVRFMEKDDPNLKHPYDWYKYGEFGPYSWRGVVLG 152
                 H D FTEEEL +IGLGYDRMVRFM+KDDP L+HPYDW+KYGEFGPYSWRGVV+G
Sbjct: 121 SQILSSHPDKFTEEELEMIGLGYDRMVRFMDKDDPRLRHPYDWFKYGEFGPYSWRGVVVG 180

Query: 153 DPIAGRFTDERVTLYSEVKDQEEWEKIE 180
           DP+ G  +DE VT+  EV++ EE+EKIE
Sbjct: 181 DPVRGTISDECVTMIGEVENHEEFEKIE 208