Jatropha Genome Database

JcCB0590911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0590911.10 - phase: 0 /partial
         (60 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26730.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...   107   2e-24

>AT3G26730.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr3:9823770-9827270 FORWARD
          Length = 772

 Score =  107 bits (267), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/60 (75%), Positives = 56/60 (93%)

Query: 1   AVDGQHLILHPLNMKCLLHHYGSYDMLPQRINGTILQLETVTQSEAMRRRYRYLSHFSLT 60
           +VDGQH+ILH LN+KCLLHHYGSYD LP R++G IL++ET+TQSEA+RRRYR+LSHFSL+
Sbjct: 526 SVDGQHIILHTLNVKCLLHHYGSYDFLPPRLSGKILEMETITQSEAIRRRYRFLSHFSLS 585