Jatropha Genome Database

JcCB0590711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0590711.10 + phase: 0 /partial
         (256 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12280.1 | Symbols: RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLAST...   347   4e-96

>AT3G12280.1 | Symbols: RBR1, RBR, RB, ATRBR1 | RBR1
           (RETINOBLASTOMA-RELATED 1); transcription factor binding
           | chr3:3913671-3918433 REVERSE
          Length = 1013

 Score =  347 bits (890), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 169/219 (77%), Positives = 185/219 (84%), Gaps = 5/219 (2%)

Query: 1   INKLAAVRINGMVERLQQSQQHIRENVYHLFQQILSQRTSLFFNRHIDQIILCCFYGVAK 60
           INKLAAVRINGMVERLQ SQQ IRE+VY  FQ +L+QRTSL F+RHIDQIILCCFYGVAK
Sbjct: 737 INKLAAVRINGMVERLQLSQQ-IRESVYCFFQHVLAQRTSLLFSRHIDQIILCCFYGVAK 795

Query: 61  ISKVNLTFREIIFNYRKQPQCKPQVFRSVFIDWSSARHNGRTGQDHVDIITFYNEIFIPA 120
           IS+++LTFREII+NYRKQPQCKP VFRSV++D    R  GR G DHVDIITFYNEIFIPA
Sbjct: 796 ISQMSLTFREIIYNYRKQPQCKPLVFRSVYVDALQCRRQGRIGPDHVDIITFYNEIFIPA 855

Query: 121 AKPLLVEVGSAGAITKASPTPEVNNNKDGQCPASPKVSPFPSLPDMSPKKVSATHNVYVS 180
            KPLLVE+G      +     E NN  +GQCP SPKVS FPS+PDMSPKKVSA HNVYVS
Sbjct: 856 VKPLLVELGP----VRNDRAVEANNKPEGQCPGSPKVSVFPSVPDMSPKKVSAVHNVYVS 911

Query: 181 PLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAI 219
           PLR SKMDALISHS+KSYYACVGESTHAYQSPSKDL+AI
Sbjct: 912 PLRGSKMDALISHSTKSYYACVGESTHAYQSPSKDLSAI 950