Jatropha Genome Database

JcCB0588921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0588921.10 - phase: 0 /pseudo/partial
         (179 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20170.1 | Symbols:  | unknown protein | chr5:6807554-6810729...   113   6e-26

>AT5G20170.1 | Symbols:  | unknown protein | chr5:6807554-6810729
           REVERSE
          Length = 653

 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 76/114 (66%)

Query: 66  RLQQNWKVKRQRVAAIAPGNEGFTIDLFDNSLYDSASLFRPTSLSTIRIDHDSAGMLAID 125
           RLQ+NWKVKRQR+ A    NEGFTIDL D+SLYD  S FRP++LSTIR+DHDSAGMLAI+
Sbjct: 165 RLQRNWKVKRQRMLASNASNEGFTIDLSDSSLYDPTSGFRPSTLSTIRVDHDSAGMLAIN 224

Query: 126 LPPKSCRSLHFGFLGVHSNEDVXXXXXXXXXXXVEHPSKETEKESASDNESIKE 179
           +P  S  SL FG++G++   +                   +EK SASD++ +KE
Sbjct: 225 VPQDSWYSLRFGYVGLNPIGNSNESDEHIDSTTGHDIPGTSEKLSASDDKYVKE 278