Jatropha Genome Database

JcCB0588301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0588301.10 + phase: 0 /partial
         (67 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04955.1 | Symbols: ATALN | ATALN (Arabidopsis allantoinase);...    98   1e-21

>AT4G04955.1 | Symbols: ATALN | ATALN (Arabidopsis allantoinase);
           allantoinase/ hydrolase | chr4:2522301-2525259 REVERSE
          Length = 506

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 54/59 (91%)

Query: 1   MPLNSFPSTVSVETFRLKLEAAEKNIYVDVGFWGGLVPENAFNASSLEALLNAGVLGLK 59
           MPLNSFPSTVS ET +LK+EAA+  I+VDVGFWGGLVP+NA N+S+LE+LL+AGVLGLK
Sbjct: 137 MPLNSFPSTVSPETLKLKIEAAKNRIHVDVGFWGGLVPDNALNSSALESLLDAGVLGLK 195