Jatropha Genome Database
- JcCB0587121.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0587121.10 - phase: 2 /pseudo/partial
(259 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G68800.1 | Symbols: BRC2, TCP12 | TCP12 (TCP DOMAIN PROTEIN 1... 83 2e-16
AT1G67260.2 | Symbols: TCP1 | TCP1; DNA binding / transcription ... 77 1e-14
AT1G67260.1 | Symbols: TCP1 | TCP1; DNA binding / transcription ... 77 1e-14
AT3G18550.2 | Symbols: BRC1, TCP18, ATTCP18 | BRC1 (BRANCHED 1);... 74 7e-14
AT3G18550.1 | Symbols: BRC1, TCP18, ATTCP18 | BRC1 (BRANCHED 1);... 74 7e-14
AT2G31070.1 | Symbols: TCP10 | TCP10 (TCP DOMAIN PROTEIN 10); tr... 68 7e-12
AT1G53230.1 | Symbols: TCP3 | TCP3; transcription factor | chr1:... 67 8e-12
AT3G15030.2 | Symbols: TCP4 | TCP4 (TCP family transcription fac... 66 2e-11
AT3G15030.1 | Symbols: TCP4, MEE35 | TCP4 (TCP family transcript... 66 2e-11
AT4G18390.2 | Symbols: | TCP family transcription factor, putat... 65 4e-11
AT4G18390.1 | Symbols: | TCP family transcription factor, putat... 65 4e-11
AT1G30210.2 | Symbols: TCP24 | TCP24 (TEOSINTE BRANCHED1, CYCLOI... 60 2e-09
AT1G30210.1 | Symbols: TCP24, ATTCP24 | TCP24 (TEOSINTE BRANCHED... 60 2e-09
AT3G02150.2 | Symbols: PTF1, TFPD | PTF1 (PLASTID TRANSCRIPTION ... 55 4e-08
AT3G02150.1 | Symbols: PTF1, TCP13, TFPD | PTF1 (PLASTID TRANSCR... 55 5e-08
AT5G60970.1 | Symbols: TCP5 | TCP5 (TEOSINTE BRANCHED1, CYCLOIDE... 54 1e-07
>AT1G68800.1 | Symbols: BRC2, TCP12 | TCP12 (TCP DOMAIN PROTEIN 12);
transcription factor | chr1:25847306-25848471 REVERSE
Length = 356
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 48/59 (81%), Gaps = 6/59 (10%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKL------SSGG 53
AQGPRDRRMRLSL++AR+FFDLQD L FDKASKT+EWL +++++IK+L S GG
Sbjct: 122 AQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSIKQLKERVAASEGG 180
>AT1G67260.2 | Symbols: TCP1 | TCP1; DNA binding / transcription
factor | chr1:25168152-25169307 REVERSE
Length = 351
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKL 49
AQG RDRR+RLS+ +AR+FFDLQD L FDKASKT++WLL ++R AIK++
Sbjct: 97 AQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEV 145
>AT1G67260.1 | Symbols: TCP1 | TCP1; DNA binding / transcription
factor | chr1:25168228-25169307 REVERSE
Length = 359
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKL 49
AQG RDRR+RLS+ +AR+FFDLQD L FDKASKT++WLL ++R AIK++
Sbjct: 97 AQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEV 145
>AT3G18550.2 | Symbols: BRC1, TCP18, ATTCP18 | BRC1 (BRANCHED 1);
transcription factor | chr3:6383769-6385604 FORWARD
Length = 429
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 41/51 (80%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLSS 51
A+G RDRRMRLSL VA+E F LQD L FDKASKTVEWLL QA+ I K+++
Sbjct: 158 AKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAT 208
>AT3G18550.1 | Symbols: BRC1, TCP18, ATTCP18 | BRC1 (BRANCHED 1);
transcription factor | chr3:6383769-6385604 FORWARD
Length = 433
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 41/51 (80%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLSS 51
A+G RDRRMRLSL VA+E F LQD L FDKASKTVEWLL QA+ I K+++
Sbjct: 158 AKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAT 208
>AT2G31070.1 | Symbols: TCP10 | TCP10 (TCP DOMAIN PROTEIN 10);
transcription factor | chr2:13220984-13222069 REVERSE
Length = 361
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 41/52 (78%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLSSG 52
++GPRDRR+RLS A +F+D+QD+L +D+ SK V+WL+ +A++AI KL G
Sbjct: 39 SKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLELG 90
>AT1G53230.1 | Symbols: TCP3 | TCP3; transcription factor |
chr1:19850260-19851435 REVERSE
Length = 391
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 40/50 (80%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLS 50
A+GPRDRR+RLS A +F+D+QD+L FD+ SK V+WL+ +A+SAI L+
Sbjct: 59 AKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDDLA 108
>AT3G15030.2 | Symbols: TCP4 | TCP4 (TCP family transcription factor
4); transcription factor | chr3:5062308-5063570 FORWARD
Length = 420
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 41/50 (82%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLS 50
A+GPRDRR+RLS A +F+D+QD+L FD+ SK V+WL+ +A+++I +L+
Sbjct: 55 AKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELA 104
>AT3G15030.1 | Symbols: TCP4, MEE35 | TCP4 (TCP family transcription
factor 4); transcription factor | chr3:5062308-5063570
FORWARD
Length = 420
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 41/50 (82%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLS 50
A+GPRDRR+RLS A +F+D+QD+L FD+ SK V+WL+ +A+++I +L+
Sbjct: 55 AKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELA 104
>AT4G18390.2 | Symbols: | TCP family transcription factor, putative
| chr4:10163212-10164309 REVERSE
Length = 365
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLSS 51
++GPRDRR+RLS+ A +F+DLQD+L +D+ SK VEWL+ A +I +L S
Sbjct: 52 SKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPS 102
>AT4G18390.1 | Symbols: | TCP family transcription factor, putative
| chr4:10163212-10164309 REVERSE
Length = 365
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLSS 51
++GPRDRR+RLS+ A +F+DLQD+L +D+ SK VEWL+ A +I +L S
Sbjct: 52 SKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPS 102
>AT1G30210.2 | Symbols: TCP24 | TCP24 (TEOSINTE BRANCHED1,
CYCLOIDEA, AND PCF FAMILY 24); transcription factor |
chr1:10628754-10629728 REVERSE
Length = 324
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKL 49
++G RDRR+RLS+ A +F+DLQD+L FD+ SK VEWL++ A +I L
Sbjct: 60 SKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDL 108
>AT1G30210.1 | Symbols: TCP24, ATTCP24 | TCP24 (TEOSINTE BRANCHED1,
CYCLOIDEA, AND PCF FAMILY 24); transcription factor |
chr1:10628754-10629728 REVERSE
Length = 324
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKL 49
++G RDRR+RLS+ A +F+DLQD+L FD+ SK VEWL++ A +I L
Sbjct: 60 SKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDL 108
>AT3G02150.2 | Symbols: PTF1, TFPD | PTF1 (PLASTID TRANSCRIPTION
FACTOR 1); transcription factor | chr3:391522-392589
FORWARD
Length = 355
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 2 QGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKL 49
+G RDRR+RLS+ A + +DLQ++L D+ SK V+WLLD A+ I +L
Sbjct: 85 RGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDEL 132
>AT3G02150.1 | Symbols: PTF1, TCP13, TFPD | PTF1 (PLASTID
TRANSCRIPTION FACTOR 1); transcription factor |
chr3:391522-392450 FORWARD
Length = 278
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 2 QGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKL 49
+G RDRR+RLS+ A + +DLQ++L D+ SK V+WLLD A+ I +L
Sbjct: 85 RGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDEL 132
>AT5G60970.1 | Symbols: TCP5 | TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA
AND PCF TRANSCRIPTION FACTOR 5); transcription factor |
chr5:24535570-24536652 REVERSE
Length = 360
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKL 49
+G RDRR+RLS+ A + +DLQD+L + SK ++WLL+ A+ + KL
Sbjct: 73 VRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKL 121