Jatropha Genome Database

JcCB0585631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0585631.10 + phase: 2 /TE/partial
         (322 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20920.1 | Symbols:  | DEAD box RNA helicase, putative | chr1...   157   7e-39
AT3G09620.1 | Symbols:  | DEAD/DEAH box helicase, putative | chr...   157   7e-39
AT1G20920.2 | Symbols:  | DEAD box RNA helicase, putative | chr1...   157   1e-38
AT2G47330.1 | Symbols:  | DEAD/DEAH box helicase, putative | chr...    66   3e-11
AT1G55150.1 | Symbols:  | DEAD box RNA helicase, putative (RH20)...    54   1e-07
AT5G63120.1 | Symbols:  | ethylene-responsive DEAD box RNA helic...    49   5e-06
AT5G63120.2 | Symbols:  | ethylene-responsive DEAD box RNA helic...    49   5e-06

>AT1G20920.1 | Symbols:  | DEAD box RNA helicase, putative |
           chr1:7285342-7288842 FORWARD
          Length = 1166

 Score =  157 bits (398), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 85/148 (57%), Positives = 101/148 (68%), Gaps = 5/148 (3%)

Query: 175 FMNSMVLPEVEKLNNATITQSF-DGXXXXXXXXXXXXRINGDQLKKSSTKSLGRIIPGED 233
           FMN+MVLPEVEK  N     +  DG            + +GD+ KK   K+LGRII GED
Sbjct: 386 FMNTMVLPEVEKFCNGAPPPAVNDGTLDSKMNG----KESGDRPKKGFNKALGRIIQGED 441

Query: 234 SDSEFVXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSVVDHSKIDYKPFRKNFYIEVKEIS 293
           SDS++                 FMKRVKKTKAEKLS+VDHSKI+Y+PFRKNFYIEVK+IS
Sbjct: 442 SDSDYSEPKNDDDPSLDEDDEEFMKRVKKTKAEKLSLVDHSKIEYEPFRKNFYIEVKDIS 501

Query: 294 RMTPEEVAAYRKQLELKIHGKDVPKPVK 321
           RMT EEV  YRK+LELK+HGKDVP+P+K
Sbjct: 502 RMTQEEVNTYRKELELKVHGKDVPRPIK 529


>AT3G09620.1 | Symbols:  | DEAD/DEAH box helicase, putative |
           chr3:2949152-2952205 REVERSE
          Length = 989

 Score =  157 bits (398), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 85/148 (57%), Positives = 101/148 (68%), Gaps = 9/148 (6%)

Query: 175 FMNSMVLPEVEKLNNATITQSFDGXXXXXXXXXXXXRINGDQLKKSSTKS-LGRIIPGED 233
           FMN+MVLPEVEKL+N  I    D             +  GDQ KK   K+ LGRII GED
Sbjct: 257 FMNTMVLPEVEKLSNIVIDGILD--------FKMNGKETGDQAKKGFNKAALGRIIQGED 308

Query: 234 SDSEFVXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSVVDHSKIDYKPFRKNFYIEVKEIS 293
           SDS++                 FMKRVKKTKAEKLS+VDHSKI+Y+PFRKNFYIEVK+IS
Sbjct: 309 SDSDYSEPKSDDDPSLDEDDEEFMKRVKKTKAEKLSLVDHSKIEYEPFRKNFYIEVKDIS 368

Query: 294 RMTPEEVAAYRKQLELKIHGKDVPKPVK 321
           RMT + V AYRK+LELK+HGKDVP+P++
Sbjct: 369 RMTQDAVNAYRKELELKVHGKDVPRPIQ 396


>AT1G20920.2 | Symbols:  | DEAD box RNA helicase, putative |
           chr1:7286356-7288842 FORWARD
          Length = 828

 Score =  157 bits (396), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/148 (57%), Positives = 101/148 (68%), Gaps = 5/148 (3%)

Query: 175 FMNSMVLPEVEKLNNATITQSF-DGXXXXXXXXXXXXRINGDQLKKSSTKSLGRIIPGED 233
           FMN+MVLPEVEK  N     +  DG            + +GD+ KK   K+LGRII GED
Sbjct: 48  FMNTMVLPEVEKFCNGAPPPAVNDGTLDSKMNG----KESGDRPKKGFNKALGRIIQGED 103

Query: 234 SDSEFVXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSVVDHSKIDYKPFRKNFYIEVKEIS 293
           SDS++                 FMKRVKKTKAEKLS+VDHSKI+Y+PFRKNFYIEVK+IS
Sbjct: 104 SDSDYSEPKNDDDPSLDEDDEEFMKRVKKTKAEKLSLVDHSKIEYEPFRKNFYIEVKDIS 163

Query: 294 RMTPEEVAAYRKQLELKIHGKDVPKPVK 321
           RMT EEV  YRK+LELK+HGKDVP+P+K
Sbjct: 164 RMTQEEVNTYRKELELKVHGKDVPRPIK 191


>AT2G47330.1 | Symbols:  | DEAD/DEAH box helicase, putative |
           chr2:19429083-19431617 REVERSE
          Length = 760

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 44/63 (69%)

Query: 260 VKKTKAEKLSVVDHSKIDYKPFRKNFYIEVKEISRMTPEEVAAYRKQLELKIHGKDVPKP 319
           V K K E ++ +DHS IDY+P  K+FY E++ IS MT +E   YR++L +++ G DV +P
Sbjct: 167 VDKRKIEPITALDHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRP 226

Query: 320 VKT 322
           VKT
Sbjct: 227 VKT 229


>AT1G55150.1 | Symbols:  | DEAD box RNA helicase, putative (RH20) |
           chr1:20574634-20577141 FORWARD
          Length = 501

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 30/43 (69%)

Query: 280 PFRKNFYIEVKEISRMTPEEVAAYRKQLELKIHGKDVPKPVKT 322
           PF KNFY+E   ++ MT  EV  YRK  E+ + GKD+PKPVK+
Sbjct: 58  PFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKS 100


>AT5G63120.1 | Symbols:  | ethylene-responsive DEAD box RNA
           helicase, putative (RH30) | chr5:25319798-25322071
           REVERSE
          Length = 484

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 281 FRKNFYIEVKEISRMTPEEVAAYRKQLELKIHGKDVPKPVK 321
           F KNFY+E   +  MT ++VA YR + ++ + G+DVPKP+K
Sbjct: 125 FEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMK 165


>AT5G63120.2 | Symbols:  | ethylene-responsive DEAD box RNA
           helicase, putative (RH30) | chr5:25318967-25322071
           REVERSE
          Length = 591

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 281 FRKNFYIEVKEISRMTPEEVAAYRKQLELKIHGKDVPKPVK 321
           F KNFY+E   +  MT ++VA YR + ++ + G+DVPKP+K
Sbjct: 125 FEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMK 165