Jatropha Genome Database

JcCB0584071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0584071.10 - phase: 1 /pseudo/partial
         (304 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44160.1 | Symbols: NUC | NUC (nutcracker); nucleic acid bind...    84   1e-16
AT1G03840.2 | Symbols: MGP | MGP (Magpie); nucleic acid binding ...    79   4e-15
AT1G03840.1 | Symbols: MGP | MGP (Magpie); nucleic acid binding ...    79   4e-15
AT4G02670.1 | Symbols: AtIDD12 | AtIDD12 (Arabidopsis thaliana I...    52   4e-07
AT2G02070.1 | Symbols: AtIDD5 | AtIDD5 (Arabidopsis thaliana Ind...    49   4e-06
AT1G55110.1 | Symbols: AtIDD7 | AtIDD7 (Arabidopsis thaliana Ind...    49   4e-06

>AT5G44160.1 | Symbols: NUC | NUC (nutcracker); nucleic acid binding
           / transcription factor/ zinc ion binding |
           chr5:17773091-17775513 FORWARD
          Length = 466

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/270 (34%), Positives = 114/270 (42%), Gaps = 85/270 (31%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSINSLAA-----STNFNY-HLMGAPI-------- 74
           RRDSFITHRAFCDALAEETA++NA + +N LAA     S N NY +LMG  I        
Sbjct: 179 RRDSFITHRAFCDALAEETAKINAVSHLNGLAAAGAPGSVNLNYQYLMGTFIPPLQPFVP 238

Query: 75  ----GPNNMAQHFSSIFKPISSSNDQQTIDQTRRGLPLWVSQGPQGHEAIINNSIQEIHR 130
                PN+  QHF     P SSS            L LW+                    
Sbjct: 239 QPQTNPNHHHQHFQP---PTSSS------------LSLWM-------------------- 263

Query: 131 QLGSLTSSGTIFGQDPLVSSSDQYHQINWPKIFGNNKQ----ISSNNVHQEELTSTTSLP 186
                       GQD  ++        +W  +FGN K     I +NN H E++T   +  
Sbjct: 264 ------------GQD--IAPPQPQPDYDW--VFGNAKAASACIDNNNTHDEQITQNANA- 306

Query: 187 LNEAAVQLASVPSLYSGXXXXXXXXXXXXXXXXXXXXLLQKAAQIGATST------DPS- 239
            +       S PSL+S                     LLQKAA+IGATST      DPS 
Sbjct: 307 -SLTTTTTLSAPSLFSSDQPQNANANSNVNMSATA--LLQKAAEIGATSTTTAATNDPST 363

Query: 240 FLGSFGLKCSS-NGQIQEGNKFCGLYGANN 268
           FL SF LK +        G KF  L+G+NN
Sbjct: 364 FLQSFPLKSTDQTTSYDSGEKFFALFGSNN 393


>AT1G03840.2 | Symbols: MGP | MGP (Magpie); nucleic acid binding /
           protein binding / transcription factor/ zinc ion binding
           | chr1:967596-970058 REVERSE
          Length = 504

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 131/285 (45%), Gaps = 72/285 (25%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSINSLAAS--TNFNYH-LMGAPIGPNNMAQHFSS 85
           RRDSFITHRAFCDALAEETAR+NAA+ + S AA+  +N NYH LMG  I   ++ Q  S 
Sbjct: 181 RRDSFITHRAFCDALAEETARLNAASHLKSFAATAGSNLNYHYLMGTLIPSPSLPQPPSF 240

Query: 86  IFK------------PISSSN-DQQTIDQTRRGLPLWVSQGPQGHEAIINNSIQEIHRQL 132
            F             PI+++N D Q + +    L LW       H+ +   +I++     
Sbjct: 241 PFGPPQPQHHHHHQFPITTNNFDHQDVMKPASTLSLWSGGNINHHQQV---TIEDR---- 293

Query: 133 GSLTSSGTIFGQDPLVSSSDQYHQINWPKIFGNNKQISSNNVHQEELTSTTSLPLNEAAV 192
                        P     D     NW  +FGN     +NN H E +T++ SL  ++  +
Sbjct: 294 ---------MAPQPHSPQED----YNW--VFGN-----ANN-HGELITTSDSLITHDNNI 332

Query: 193 QLA------------SVPSLYSGXX--XXXXXXXXXXXXXXXXXXLLQKAAQIGATST-- 236
            +             SVPSL+S                       LLQKAAQ+GATS+  
Sbjct: 333 NIVQSKENANGATSLSVPSLFSSVDQITQDANAASVAVANMSATALLQKAAQMGATSSTS 392

Query: 237 --------DPSFLGSFGLKCSSNGQIQEG--NKFCGLYGANNLDL 271
                     ++L SF  K  SN  +++G  ++F   +G+N+++L
Sbjct: 393 PTTTITTDQSAYLQSFASK--SNQIVEDGGSDRFFASFGSNSVEL 435


>AT1G03840.1 | Symbols: MGP | MGP (Magpie); nucleic acid binding /
           protein binding / transcription factor/ zinc ion binding
           | chr1:967596-970058 REVERSE
          Length = 506

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 131/285 (45%), Gaps = 72/285 (25%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSINSLAAS--TNFNYH-LMGAPIGPNNMAQHFSS 85
           RRDSFITHRAFCDALAEETAR+NAA+ + S AA+  +N NYH LMG  I   ++ Q  S 
Sbjct: 183 RRDSFITHRAFCDALAEETARLNAASHLKSFAATAGSNLNYHYLMGTLIPSPSLPQPPSF 242

Query: 86  IFK------------PISSSN-DQQTIDQTRRGLPLWVSQGPQGHEAIINNSIQEIHRQL 132
            F             PI+++N D Q + +    L LW       H+ +   +I++     
Sbjct: 243 PFGPPQPQHHHHHQFPITTNNFDHQDVMKPASTLSLWSGGNINHHQQV---TIEDR---- 295

Query: 133 GSLTSSGTIFGQDPLVSSSDQYHQINWPKIFGNNKQISSNNVHQEELTSTTSLPLNEAAV 192
                        P     D     NW  +FGN     +NN H E +T++ SL  ++  +
Sbjct: 296 ---------MAPQPHSPQED----YNW--VFGN-----ANN-HGELITTSDSLITHDNNI 334

Query: 193 QLA------------SVPSLYSGXX--XXXXXXXXXXXXXXXXXXLLQKAAQIGATST-- 236
            +             SVPSL+S                       LLQKAAQ+GATS+  
Sbjct: 335 NIVQSKENANGATSLSVPSLFSSVDQITQDANAASVAVANMSATALLQKAAQMGATSSTS 394

Query: 237 --------DPSFLGSFGLKCSSNGQIQEG--NKFCGLYGANNLDL 271
                     ++L SF  K  SN  +++G  ++F   +G+N+++L
Sbjct: 395 PTTTITTDQSAYLQSFASK--SNQIVEDGGSDRFFASFGSNSVEL 437


>AT4G02670.1 | Symbols: AtIDD12 | AtIDD12 (Arabidopsis thaliana
           Indeterminate(ID)-Domain 12); nucleic acid binding /
           transcription factor/ zinc ion binding |
           chr4:1176190-1178489 REVERSE
          Length = 402

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 33/43 (76%), Gaps = 1/43 (2%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSINSLAASTNFN-YHLM 70
           R+D+FITHRAFCDALAEE+AR+++ +S N    + NF  +H M
Sbjct: 196 RKDTFITHRAFCDALAEESARLHSTSSSNLTNPNPNFQGHHFM 238


>AT2G02070.1 | Symbols: AtIDD5 | AtIDD5 (Arabidopsis thaliana
           Indeterminate(ID)-Domain 5); nucleic acid binding /
           transcription factor/ zinc ion binding |
           chr2:505523-509154 FORWARD
          Length = 602

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 30/39 (76%), Gaps = 3/39 (7%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSINSLAASTNFNY 67
           RRDSFITHRAFCDALA+E+AR    TS+ SL  S +F Y
Sbjct: 194 RRDSFITHRAFCDALAQESAR--HPTSLTSL-PSHHFPY 229


>AT1G55110.1 | Symbols: AtIDD7 | AtIDD7 (Arabidopsis thaliana
           Indeterminate(ID)-Domain 7); nucleic acid binding /
           transcription factor/ zinc ion binding |
           chr1:20560406-20562625 REVERSE
          Length = 455

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/22 (90%), Positives = 21/22 (95%)

Query: 29  RRDSFITHRAFCDALAEETARV 50
           RRDSFITHRAFCDALAEE+AR 
Sbjct: 206 RRDSFITHRAFCDALAEESARA 227