Jatropha Genome Database

JcCB0580221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0580221.10 + phase: 0 
         (199 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17120.2 | Symbols:  | unknown protein | chr3:5842410-5843246...    73   9e-14
AT3G17120.1 | Symbols:  | unknown protein | chr3:5842410-5843246...    73   9e-14
AT1G02380.1 | Symbols:  | unknown protein | chr1:477814-478443 F...    59   3e-09
AT4G01960.1 | Symbols:  | unknown protein | chr4:851387-852441 R...    54   5e-08

>AT3G17120.2 | Symbols:  | unknown protein | chr3:5842410-5843246
           FORWARD
          Length = 219

 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 105 PPRPPTGPTLDAADQKLIKELTELAMLKRAKVERXXXXXXXXXXXXXXXXXX---TIAMV 161
           PPRPP GP+LDAADQKLI+E+ ELAMLKRA++ER                      +A +
Sbjct: 79  PPRPPRGPSLDAADQKLIREIAELAMLKRARIERMRALKKSRAAKAASAASSLGNVLATL 138

Query: 162 FTVLFCLVIVFQG 174
           FT +F  V+VFQG
Sbjct: 139 FTAIFFFVLVFQG 151


>AT3G17120.1 | Symbols:  | unknown protein | chr3:5842410-5843246
           FORWARD
          Length = 219

 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 105 PPRPPTGPTLDAADQKLIKELTELAMLKRAKVERXXXXXXXXXXXXXXXXXX---TIAMV 161
           PPRPP GP+LDAADQKLI+E+ ELAMLKRA++ER                      +A +
Sbjct: 79  PPRPPRGPSLDAADQKLIREIAELAMLKRARIERMRALKKSRAAKAASAASSLGNVLATL 138

Query: 162 FTVLFCLVIVFQG 174
           FT +F  V+VFQG
Sbjct: 139 FTAIFFFVLVFQG 151


>AT1G02380.1 | Symbols:  | unknown protein | chr1:477814-478443
           FORWARD
          Length = 209

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 105 PPRPPTGPTLDAADQKLIKELTELAMLKRAKVERXXXXXXXXXXXXXXXXXXTI---AMV 161
           PPRPP GP+L   D+K+++++ ELAM KRA++ER                   I   +M+
Sbjct: 92  PPRPPKGPSLSENDRKIMRDIQELAMRKRARIERMKKSLKRLKAAKTSPSSPCITIFSMI 151

Query: 162 FTVLFCLVIVFQGN 175
            T +F   +VFQG 
Sbjct: 152 ITAIFFAFLVFQGT 165


>AT4G01960.1 | Symbols:  | unknown protein | chr4:851387-852441
           REVERSE
          Length = 236

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 114 LDAADQKLIKELTELAMLKRAKVERXXXXXXXXXXXXXXXXXXTIAMVFTVLFCLVIVFQ 173
           L A DQKL++E+TELAM KRA++ER                    AM+ TV+F + ++FQ
Sbjct: 110 LSANDQKLMREITELAMRKRARIERMKTLRRLKAAKSSSPCSSIFAMIVTVIFFVFLIFQ 169

Query: 174 G 174
           G
Sbjct: 170 G 170