Jatropha Genome Database

JcCB0580021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0580021.10 + phase: 1 /partial
         (112 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60900.1 | Symbols:  | U2 snRNP auxiliary factor large subuni...   179   2e-46
AT1G60830.1 | Symbols:  | U2 snRNP auxiliary factor large subuni...   170   1e-43
AT4G36690.1 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding / nucl...   166   3e-42
AT4G36690.2 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding / nucl...    72   8e-14
AT4G36690.3 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding / nucl...    70   3e-13
AT2G16940.1 | Symbols:  | RNA recognition motif (RRM)-containing...    52   1e-07
AT1G30480.1 | Symbols: DRT111 | DRT111; nucleic acid binding / n...    52   1e-07

>AT1G60900.1 | Symbols:  | U2 snRNP auxiliary factor large subunit,
           putative | chr1:22424008-22427806 FORWARD
          Length = 589

 Score =  179 bits (455), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 83/113 (73%), Positives = 99/113 (87%), Gaps = 2/113 (1%)

Query: 1   QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNAD 58
           QRLM QP   PTK+VCLTQVV  D+L+DDEEY +I+EDMR EGGKFG LVNVVIPRPN D
Sbjct: 476 QRLMFQPGGTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPD 535

Query: 59  SEALPGVGKVFLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGEYD 111
            +  PGVGKVFLEYAD++G++KAR+GMNGRKFGGNQVVAVY+PE+K+ QG+Y+
Sbjct: 536 HDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDYE 588


>AT1G60830.1 | Symbols:  | U2 snRNP auxiliary factor large subunit,
           putative | chr1:22395058-22395603 REVERSE
          Length = 111

 Score =  170 bits (431), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/110 (72%), Positives = 95/110 (86%), Gaps = 2/110 (1%)

Query: 4   MLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNADSEA 61
           MLQP   PTK+VCLTQVV  D+L+DD EY DI+EDM  EGGKFG LVNVVIPRPN D + 
Sbjct: 1   MLQPGGTPTKIVCLTQVVTADDLRDDAEYADIMEDMSQEGGKFGNLVNVVIPRPNPDHDP 60

Query: 62  LPGVGKVFLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGEYD 111
            PGVGKVFLEYAD++G++KAR+GMNGRKFGGNQVVAVY+PE+K+ QG+Y+
Sbjct: 61  TPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDYE 110


>AT4G36690.1 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding / nucleic
           acid binding / nucleotide binding |
           chr4:17294139-17297609 REVERSE
          Length = 573

 Score =  166 bits (420), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 95/112 (84%), Gaps = 2/112 (1%)

Query: 1   QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNAD 58
           QR+MLQP  + T VVCLTQVV  DEL+DDEEY DI+EDMR EGGKFG L NVVIPRP+ +
Sbjct: 460 QRVMLQPGAVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPN 519

Query: 59  SEALPGVGKVFLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGEY 110
            E + G+GKVFL+YAD +G+T+AR GMNGRKFGGN+VVAVY+PE+KF QG+Y
Sbjct: 520 GEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDY 571


>AT4G36690.2 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding / nucleic
           acid binding / nucleotide binding |
           chr4:17294591-17297609 REVERSE
          Length = 542

 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 39/47 (82%), Gaps = 2/47 (4%)

Query: 1   QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFG 45
           QR+MLQP  + T VVCLTQVV  DEL+DDEEY DI+EDMR EGGKFG
Sbjct: 460 QRVMLQPGAVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFG 506


>AT4G36690.3 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding / nucleic
           acid binding / nucleotide binding |
           chr4:17294422-17297609 REVERSE
          Length = 565

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 38/47 (80%), Gaps = 2/47 (4%)

Query: 1   QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFG 45
           QR+MLQP  + T VVCLTQVV  DEL+DDEEY DI+EDMR EGGKF 
Sbjct: 460 QRVMLQPGAVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFA 506


>AT2G16940.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr2:7342869-7347052 REVERSE
          Length = 561

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 17/106 (16%)

Query: 8   LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNADSEALPGVGK 67
           +P++ + L  + +P    +D+  EDI ED++ E  KFG L ++ + + +        VG 
Sbjct: 462 VPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNS--------VGF 513

Query: 68  VFLEYADIEGATKARAGMNGRKFGGNQVVAVY---------FPENK 104
           V+L + + + A  A+  ++GR F G  + A Y         FPE+K
Sbjct: 514 VYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEAKFPESK 559


>AT1G30480.1 | Symbols: DRT111 | DRT111; nucleic acid binding /
           nucleotide binding | chr1:10790315-10792423 FORWARD
          Length = 387

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 5/101 (4%)

Query: 9   PTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNADSEALPGVGKV 68
           PT+V+ L  +V P ++  D+E ED   ++  E GK+GT+  V+I      +  +    ++
Sbjct: 281 PTRVLLLRNMVGPGQV--DDELED---EVGGECGKYGTVTRVLIFEITEPNFPVHEAVRI 335

Query: 69  FLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGE 109
           F++++  E  TKA   ++GR FGG  V A ++ E KF + E
Sbjct: 336 FVQFSRPEETTKALVDLDGRYFGGRTVRATFYDEEKFSKNE 376