Jatropha Genome Database

JcCB0572431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0572431.10 + phase: 0 /partial
         (325 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48300.1 | Symbols:  | unknown protein | chr1:17847391-178483...    67   1e-11

>AT1G48300.1 | Symbols:  | unknown protein | chr1:17847391-17848338
           FORWARD
          Length = 285

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 11/199 (5%)

Query: 136 LMDDVKQKMISEATEFLLAELRHLKSXXXXXXXXXXXXXASLINGEAPVXXXXXXXXXXX 195
           L+ +++ K ISEATE L+ +L  LK+             A     +  +           
Sbjct: 38  LVGEIQTKTISEATEILVKQLEQLKAEEKILKKQRKEEKAKAKAMKK-MTEMDSESSSSS 96

Query: 196 XXXXXXCEV--VMDVSRLGNTAVKQFIENETEHANYREQATLAEISTPVLETTESFNVLN 253
                 C+   V+D+S L N A K  +E     A       + E +     T+E+  +  
Sbjct: 97  ESSDSDCDKGKVVDMSSLRNKA-KPVLEPLQPEATVATLPRIQEDAISCKNTSEALQIAL 155

Query: 254 IEEDCRSNCSNESENT----GMAVAGGK--KIEICMGGKCKKMGAIALLEEFEKKV-GKE 306
                  + +N  +       ++V G    ++E+CMGGKCK+ G   LL+EF++ + G E
Sbjct: 156 QTSTIFPSMANPGQTLKTVEAVSVVGLPLNRVEVCMGGKCKRSGGALLLDEFQRAMTGFE 215

Query: 307 GAVVGCKCMGKCKNAPNVK 325
           G+ V CKCMGKC++ PNV+
Sbjct: 216 GSAVACKCMGKCRDGPNVR 234