Jatropha Genome Database

JcCB0571821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0571821.10 + phase: 2 /partial
         (133 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24080.2 | Symbols:  | KRR1 family protein | chr3:8695191-869...    62   8e-11
AT3G24080.1 | Symbols:  | KRR1 family protein | chr3:8695191-869...    61   2e-10

>AT3G24080.2 | Symbols:  | KRR1 family protein |
           chr3:8695191-8697107 REVERSE
          Length = 630

 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 72/120 (60%), Gaps = 7/120 (5%)

Query: 1   YGLKTEEILMLDDRELNQYVSVKKLVPYKEREWKVPDNKRFQQKMWIRELMRGRLNHLKT 60
           + L T EIL LDD ELNQYV +KK+ PY E++W+V  +K  +QK  IREL  G+ +  K+
Sbjct: 515 FELDTGEILTLDDAELNQYVPLKKMAPYVEKDWEVNRHKVKEQKRKIRELWEGKHDEKKS 574

Query: 61  NKKNRSKVDGDKSTSSVDSHQDGQVEFEESNVKKEKLSRQAKRRRRQAELKLPASRLVAY 120
            K+ ++ V   K T      +            + KLSR+AKRRRRQAE KLP SR+ AY
Sbjct: 575 KKRKKNDVVETKPTPKEAEAE-------AEAEAEAKLSRKAKRRRRQAEKKLPPSRMAAY 627


>AT3G24080.1 | Symbols:  | KRR1 family protein |
           chr3:8695191-8697107 REVERSE
          Length = 638

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 77/121 (63%), Gaps = 1/121 (0%)

Query: 1   YGLKTEEILMLDDRELNQYVSVKKLVPYKEREWKVPDNKRFQQKMWIRELMRGRLNHLKT 60
           + L T EIL LDD ELNQYV +KK+ PY E++W+V  +K  +QK  IREL  G+ +  K+
Sbjct: 515 FELDTGEILTLDDAELNQYVPLKKMAPYVEKDWEVNRHKVKEQKRKIRELWEGKHDEKKS 574

Query: 61  NKKNRSKVDGDKSTS-SVDSHQDGQVEFEESNVKKEKLSRQAKRRRRQAELKLPASRLVA 119
            K+ ++ V   K T    ++  + + E E     + KLSR+AKRRRRQAE KLP SR+ A
Sbjct: 575 KKRKKNDVVETKPTPKEAEAEAEAEAEAEAEAEAEAKLSRKAKRRRRQAEKKLPPSRMAA 634

Query: 120 Y 120
           Y
Sbjct: 635 Y 635