Jatropha Genome Database

JcCB0569231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0569231.10 - phase: 0 /partial/short
         (42 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34750.1 | Symbols:  | RNA polymerase I specific transcriptio...    57   2e-09
AT2G39240.1 | Symbols:  | RNA polymerase I transcription factor/...    56   5e-09
AT1G30590.1 | Symbols:  | RNA polymerase I specific transcriptio...    53   3e-08

>AT2G34750.1 | Symbols:  | RNA polymerase I specific transcription
           initiation factor RRN3 family protein |
           chr2:14660449-14663792 REVERSE
          Length = 613

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 33/42 (78%)

Query: 1   FVLFYACSLDPENCGLKFARTLADRFVYGDNPLTSRMSSVAY 42
           F++FYACSLDPENCG+KFA  L + F+  +  + +RMS+VAY
Sbjct: 338 FLIFYACSLDPENCGVKFASKLVEIFLSSNKHVATRMSAVAY 379


>AT2G39240.1 | Symbols:  | RNA polymerase I transcription factor/
           binding | chr2:16384786-16387827 REVERSE
          Length = 573

 Score = 56.2 bits (134), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 32/42 (76%)

Query: 1   FVLFYACSLDPENCGLKFARTLADRFVYGDNPLTSRMSSVAY 42
           F++FYACSLDPENCG+KFA  L ++F+  +N   +R ++V Y
Sbjct: 310 FLMFYACSLDPENCGVKFASKLLEKFLSSNNNQVTRTNAVTY 351


>AT1G30590.1 | Symbols:  | RNA polymerase I specific transcription
           initiation factor RRN3 family protein |
           chr1:10835976-10839524 REVERSE
          Length = 604

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 1   FVLFYACSLDPENCGLKFARTLADRFVYGDNPLTSRMSSVAY 42
           F++FYACSLDPENCG++FA  L D ++  +    +RMS+VAY
Sbjct: 325 FLMFYACSLDPENCGVRFASKLLDIYLSSNTCRLTRMSAVAY 366