Jatropha Genome Database

JcCB0568851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0568851.10 - phase: 0 /partial
         (342 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41900.1 | Symbols:  | zinc finger (CCCH-type) family protein...   224   8e-59
AT5G12850.1 | Symbols:  | zinc finger (CCCH-type) family protein...   192   2e-49
AT2G40140.2 | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | CZF1; transcr...    74   2e-13
AT2G40140.1 | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | CZF1; transcr...    74   2e-13
AT3G55980.1 | Symbols: SZF1, ATSZF1 | SZF1 (SALT-INDUCIBLE ZINC ...    59   3e-09
AT5G58620.1 | Symbols:  | zinc finger (CCCH-type) family protein...    59   5e-09

>AT2G41900.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr2:17491352-17493502 FORWARD
          Length = 716

 Score =  224 bits (570), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 164/333 (49%), Positives = 211/333 (63%), Gaps = 58/333 (17%)

Query: 27  PMSPTASS--ISHSSLAWPQPNVPTLHLPAXXXXXXXXXXXXXXXDIPPEDLNLLSDFDA 84
           P+SP+A+   +SHS++AWPQPNVP LHLP                DIP ++ N+L+D++ 
Sbjct: 401 PLSPSAAGNGMSHSNMAWPQPNVPALHLPGSNLQSSRLRSSLNARDIPTDEFNMLADYE- 459

Query: 85  QQQILNDLTCFSQSRNNSASLNRSGRSKTLTPSNLEELFSAE-ISSPRYSDQ--AAAVFS 141
           QQQ+LN+          S +L+RSGR K++ PSNLE+LFSAE  SSPR++D   A+AVFS
Sbjct: 460 QQQLLNEY---------SNALSRSGRMKSMPPSNLEDLFSAEGSSSPRFTDSALASAVFS 510

Query: 142 PTHKSAVLN----QFQQQQSMLSPINTSVFSPKNVDHPLLQASFGMGSPGRMSPRS-VEP 196
           PTHKSAV N    Q QQQQSMLSPINTS  SPK+VDH L          GRMSPR+ VEP
Sbjct: 511 PTHKSAVFNQFQQQQQQQQSMLSPINTSFSSPKSVDHSLFSGG------GRMSPRNVVEP 564

Query: 197 ISPMGSRLSAFVQREK----------QHQQLRSLSSRDLGSNNPAASIVESPV--NSW-T 243
           ISPM +R+S   Q  K          Q  Q RSLSSR+L +N  ++ IV SPV  N+W +
Sbjct: 565 ISPMSARVSMLAQCVKQQQQQQQQQQQQHQFRSLSSRELRTN--SSPIVGSPVNNNTWSS 622

Query: 244 KWGSPNGKLDWSINGGDELGHLRRSSSFELGNNGEEPDLSWVQSLVKESPPEMLKEKFGV 303
           KWGS NG+ DW ++  + LG LR SSSF+    G+EPD+SWVQSLVKE+P E  KEK   
Sbjct: 623 KWGSSNGQPDWGMS-SEALGKLRSSSSFD----GDEPDVSWVQSLVKETPAEA-KEK--- 673

Query: 304 PVSGAASSGEGL----NPSSQI--DSVLESWLE 330
             +  +SSGE +    NP   +   + LE+W+E
Sbjct: 674 --AATSSSGEHVMKQPNPVEPVMDHAGLEAWIE 704


>AT5G12850.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr5:4057068-4059188 FORWARD
          Length = 706

 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/323 (41%), Positives = 187/323 (57%), Gaps = 41/323 (12%)

Query: 24  FNQPMSPTAS-SISHSSLAWPQPNVPTLHLPAXXXXXXXXXXXXXXXDIPPEDLNLLSDF 82
           F  P+SP+ + S+ HSS+ WPQ N+P L+LP                DIP E L++L +F
Sbjct: 403 FTPPISPSGNGSMPHSSMGWPQQNIPALNLPGSNIQLSRLRSSLNARDIPSEQLSMLHEF 462

Query: 83  DAQQQILNDLTCFSQSRNNSASLNRSGRSKTLTPSNLEELFSAEISSPRYSDQAA--AVF 140
           + Q+Q+  D+       ++   +N S R KTL PSNLEELFSAE++SPR+SDQ A  +V 
Sbjct: 463 EMQRQLAGDM-------HSPRFMNHSARPKTLNPSNLEELFSAEVASPRFSDQLAVSSVL 515

Query: 141 SPTHKSAVLNQFQ-QQQSMLSPINTSVF-SPKNVD-HPLLQASFGMGSPGRMSPRSVEPI 197
           SP+HKSA+LNQ Q  +QSMLSPI T++  SPKNV+ H LLQ +         SPR  EPI
Sbjct: 516 SPSHKSALLNQLQNNKQSMLSPIKTNLMSSPKNVEQHSLLQQA--------SSPRGGEPI 567

Query: 198 SPMGSRLSAFVQREKQHQQLRSLSSRDLGSNNPAASIVE---SPVNSWTKWGSPNG-KLD 253
           SPM +R+       KQ    RSLSSRD GS+ P   +     SP++ W+ W   +G K+D
Sbjct: 568 SPMNARM-------KQQLHSRSLSSRDFGSSLPRDLMPTDSGSPLSPWSSWDQTHGSKVD 620

Query: 254 WSINGGDELGHLRRSSSFELGNN-GEEPDLSWVQSLVKESPP-----EMLKEKFGVPVSG 307
           WS+   DELG LR+S S  L NN   E D+SW Q ++K+S        ++      P++ 
Sbjct: 621 WSVQ-SDELGRLRKSHS--LANNPNREADVSWAQQMLKDSSSPRNGNRVVNMNGARPLTQ 677

Query: 308 AASSGEGLNPSSQIDSVLESWLE 330
             SS    N  ++   +L++WLE
Sbjct: 678 GGSSVNPHNSDTRESDILDAWLE 700


>AT2G40140.2 | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | CZF1;
           transcription factor | chr2:16772537-16774330 FORWARD
          Length = 597

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 13/80 (16%)

Query: 243 TKWGSPNGKLDWSINGGDELGHLRRSSSFEL-GNNG-----------EEPDLSWVQSLVK 290
           + WGSPNGKL+W +   DEL  LRRS+SF + GNN            +EPD+SWV SLVK
Sbjct: 496 SDWGSPNGKLEWGMQR-DELNKLRRSASFGIHGNNNNSVSRPARDYSDEPDVSWVNSLVK 554

Query: 291 ESPPEMLKEKFGVPVSGAAS 310
           E+ PE + E+ G  V+GAAS
Sbjct: 555 ENAPERVNERVGNTVNGAAS 574


>AT2G40140.1 | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | CZF1;
           transcription factor | chr2:16772537-16774330 FORWARD
          Length = 597

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 13/80 (16%)

Query: 243 TKWGSPNGKLDWSINGGDELGHLRRSSSFEL-GNNG-----------EEPDLSWVQSLVK 290
           + WGSPNGKL+W +   DEL  LRRS+SF + GNN            +EPD+SWV SLVK
Sbjct: 496 SDWGSPNGKLEWGMQR-DELNKLRRSASFGIHGNNNNSVSRPARDYSDEPDVSWVNSLVK 554

Query: 291 ESPPEMLKEKFGVPVSGAAS 310
           E+ PE + E+ G  V+GAAS
Sbjct: 555 ENAPERVNERVGNTVNGAAS 574


>AT3G55980.1 | Symbols: SZF1, ATSZF1 | SZF1 (SALT-INDUCIBLE ZINC
           FINGER 1); transcription factor | chr3:20776857-20778599
           FORWARD
          Length = 580

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 10/65 (15%)

Query: 237 SPVNSWTKWGSPNGKLDWSINGGDELGHLRRSSSFEL-GNNG--------EEPDLSWVQS 287
           +P ++ + WGSPNGKL+W +  G+EL  +RRS SF + GNN         +EPD+SWV S
Sbjct: 485 APQSNLSDWGSPNGKLEWGMK-GEELNKMRRSVSFGIHGNNNNNAARDYRDEPDVSWVNS 543

Query: 288 LVKES 292
           LVK+S
Sbjct: 544 LVKDS 548


>AT5G58620.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr5:23693959-23695782 FORWARD
          Length = 607

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 19/104 (18%)

Query: 200 MGSRLSAFVQREKQHQQLRSLSSRDLGSNNPAASIVESPVNSWTKWGSPNGKLDWSINGG 259
           + SR + F ++  Q     S   R+ G N+  A I          WGS +GKLDWS+  G
Sbjct: 488 LASRAAEFAKQRSQ-----SFIERNNGLNHHPA-ISSMTTTCLNDWGSLDGKLDWSVQ-G 540

Query: 260 DELGHLRRSSSFEL------------GNNGEEPDLSWVQSLVKE 291
           DEL  LR+S+SF L            G   EEPD+SWV+ LVKE
Sbjct: 541 DELQKLRKSTSFRLRAGGMESRLPNEGTGLEEPDVSWVEPLVKE 584