Jatropha Genome Database

JcCB0555631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0555631.10 - phase: 1 /pseudo/partial
         (290 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16910.1 | Symbols: AMS | AMS (ABORTED MICROSPORES); DNA bind...   172   2e-43
AT1G10610.1 | Symbols:  | DNA binding / transcription factor | c...    47   1e-05

>AT2G16910.1 | Symbols: AMS | AMS (ABORTED MICROSPORES); DNA binding
           / transcription factor | chr2:7331721-7334077 FORWARD
          Length = 571

 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/171 (57%), Positives = 120/171 (70%), Gaps = 8/171 (4%)

Query: 87  LMGDSMIYVPWFP-KFLILQDELKEHSDDEDGKNGNQSNIPSETLSQNGGLGNGFQAGAS 145
           ++GD++ YV     +   LQDEL+E+S+ EDG     SN P   +S NG +  GF  G S
Sbjct: 348 ILGDAINYVKELQNEAKELQDELEENSETEDG-----SNRPQGGMSLNGTVVTGFHPGLS 402

Query: 146 -EVSCPKLNQQKS-ENFHDKGQQMEVQVEVAQIDGNEFFVKVFCEHKAGGFVRLMEALDS 203
              + P + Q    EN +DKGQ+ME QV+VAQ+DG EFFVKV CE+K GGF RLMEALDS
Sbjct: 403 CNSNVPSVKQDVDLENSNDKGQEMEPQVDVAQLDGREFFVKVICEYKPGGFTRLMEALDS 462

Query: 204 LGLEVTNVNVTSCRGLVSNVFKVEKKDSEMVQADYVRNSLLELTRDHPRGW 254
           LGLEVTN N T    LVSNVFKVEK D+EMVQA++VRNSLLE+TR+  RGW
Sbjct: 463 LGLEVTNANTTRYLSLVSNVFKVEKNDNEMVQAEHVRNSLLEITRNTSRGW 513


>AT1G10610.1 | Symbols:  | DNA binding / transcription factor |
           chr1:3506463-3508752 FORWARD
          Length = 441

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 168 EVQVEVAQIDGNEFFVKVFCEHKAGGFVRLMEALDSLGLEVTNVNVTSCRGLVSNVFKVE 227
           EV++EV +    +F ++V  EHK  GF RL+EA+D   LE+ +VN T     V  V  V 
Sbjct: 359 EVKIEVHETGERDFLIRVVQEHKQDGFKRLIEAVDLCELEIIDVNFTRLDLTVMTVLNV- 417

Query: 228 KKDSEMVQADYVRNSLLEL 246
           K + + +    +R+ LL++
Sbjct: 418 KANKDGIACGILRDLLLKM 436