Jatropha Genome Database

JcCB0550991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0550991.10 - phase: 0 /partial
         (183 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17860.1 | Symbols: JAZ3, JAI3, TIFY6B | JAZ3 (JASMONATE-ZIM-...    59   2e-09
AT1G48500.1 | Symbols: JAZ4, TIFY6A | JAZ4 (JASMONATE-ZIM-DOMAIN...    52   3e-07
AT1G48500.2 | Symbols: JAZ4, TIFY6A | JAZ4 (JASMONATE-ZIM-DOMAIN...    52   3e-07

>AT3G17860.1 | Symbols: JAZ3, JAI3, TIFY6B | JAZ3
           (JASMONATE-ZIM-DOMAIN PROTEIN 3) | chr3:6119968-6122691
           FORWARD
          Length = 352

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 40/189 (21%)

Query: 1   MERDFLGLNSKEPLAVVKEEVNSDAYKEIGFSKGSGIHWPFSNKVSA-LPHLNSFKVALE 59
           MERDFLGL SK     VKEE +  +      +   G++W FSNKVSA      SF+   E
Sbjct: 1   MERDFLGLGSKNSPITVKEETSESSRDS---APNRGMNWSFSNKVSASSSQFLSFRPTQE 57

Query: 60  DKTKRIVSDSLASPG-FLSISTADASDPSQRQFMPEIQKSFNHDRQGGSHFTLTAYPAQH 118
           D+ ++  +  L   G F+  S AD  D +++     +Q                      
Sbjct: 58  DRHRKSGNYHLPHSGSFMPSSVADVYDSTRKAPYSSVQ---------------------- 95

Query: 119 EVHSVHHPLDVKMFPVSNH---GSLISMAKPFSSKNYYATSSQNMVGNTTKPQLLGGIPV 175
                     V+MFP SN     + +SM+ P    ++YA   ++ + N    Q L G+P+
Sbjct: 96  ---------GVRMFPNSNQHEETNAVSMSMPGFQSHHYAPGGRSFMNNNNNSQPLVGVPI 146

Query: 176 TTPQ-TIIP 183
             P  +I+P
Sbjct: 147 MAPPISILP 155


>AT1G48500.1 | Symbols: JAZ4, TIFY6A | JAZ4 (JASMONATE-ZIM-DOMAIN
          PROTEIN 4) | chr1:17931658-17934433 FORWARD
          Length = 310

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 13/97 (13%)

Query: 1  MERDFLGLNSKEPLAVVKEEVNSDAYKEIGFSKGSGIHWPFSNKVSALPHLNSFKVALED 60
          MERDFLGL SK     VKEE N D+    G      + W FS+KV + P   SF  + ++
Sbjct: 1  MERDFLGLGSKLSPITVKEETNEDSAPSRGM-----MDWSFSSKVGSGPQFLSFGTSQQE 55

Query: 61 KTKRIVSDSLASPGFLSISTADASDPSQRQFMPEIQK 97
               V+D L S        + A D +QR +   +Q+
Sbjct: 56 TRVNTVNDHLLS--------SAAMDQNQRTYFSSLQE 84


>AT1G48500.2 | Symbols: JAZ4, TIFY6A | JAZ4 (JASMONATE-ZIM-DOMAIN
          PROTEIN 4) | chr1:17931658-17934255 FORWARD
          Length = 277

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 13/97 (13%)

Query: 1  MERDFLGLNSKEPLAVVKEEVNSDAYKEIGFSKGSGIHWPFSNKVSALPHLNSFKVALED 60
          MERDFLGL SK     VKEE N D+    G      + W FS+KV + P   SF  + ++
Sbjct: 1  MERDFLGLGSKLSPITVKEETNEDSAPSRGM-----MDWSFSSKVGSGPQFLSFGTSQQE 55

Query: 61 KTKRIVSDSLASPGFLSISTADASDPSQRQFMPEIQK 97
               V+D L S        + A D +QR +   +Q+
Sbjct: 56 TRVNTVNDHLLS--------SAAMDQNQRTYFSSLQE 84