Jatropha Genome Database

JcCB0550571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0550571.10 + phase: 1 /pseudo/partial
         (280 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39570.1 | Symbols:  | ACT domain-containing protein | chr2:1...   367   e-102
AT2G36840.1 | Symbols:  | ACT domain-containing protein | chr2:1...   240   6e-64

>AT2G39570.1 | Symbols:  | ACT domain-containing protein |
           chr2:16507963-16509741 FORWARD
          Length = 411

 Score =  367 bits (942), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/253 (69%), Positives = 209/253 (82%), Gaps = 2/253 (0%)

Query: 28  ELLLTEKRRVDTCRHLFAVFKEYCISCELQLAGPEYESLQNFSSLPLTIAEELFSSCTQA 87
           +LL T++R+  TC HL AV  E+ +SCEL+LAGPE ES+Q FSSLP   A+ELF      
Sbjct: 161 DLLHTKQRQTKTCDHLTAVLGEHGVSCELELAGPELESVQRFSSLPPLAADELFGP--DG 218

Query: 88  ILMDTSSSKKASVTVDNHLSPAHTLLQIQCIDQKGLFYDILRTSKDCDIQIAYGRFSSSV 147
             +  SSS KA +TVDN LSPAHTLLQI+C+DQKGLFYDILRTSKDCD+ IAYGRFSS V
Sbjct: 219 FDISGSSSNKAVLTVDNQLSPAHTLLQIRCVDQKGLFYDILRTSKDCDVHIAYGRFSSKV 278

Query: 148 KGHRNVDLFIQQSDGKKIIDPKLQLTLCSRLKAEMLHPFRVIVVNQGPDTELLVANPVEL 207
           KG+RN++LF++ +DG KI+DPK Q   C+RLK EM+ P RVI+VN+GPDTELLVANPVEL
Sbjct: 279 KGYRNLELFVRGTDGNKIMDPKHQANFCARLKEEMVCPLRVIIVNRGPDTELLVANPVEL 338

Query: 208 CGKGRPRVFYDVTLALKTLGICIFSAKIGRHSTEDRQWEVYRFLLDENCEVPIASAKSRK 267
            GKGRPRVFYDVTLALK+LGICIFSA+IGRHST DRQWEVYRFLLDE+ E P+AS ++R 
Sbjct: 339 SGKGRPRVFYDVTLALKSLGICIFSAEIGRHSTLDRQWEVYRFLLDESREFPLASLRARN 398

Query: 268 QIVDRVRKTLMGW 280
           Q+VDRV KTLMGW
Sbjct: 399 QVVDRVTKTLMGW 411


>AT2G36840.1 | Symbols:  | ACT domain-containing protein |
           chr2:15451834-15453550 REVERSE
          Length = 410

 Score =  240 bits (613), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 128/255 (50%), Positives = 168/255 (65%), Gaps = 9/255 (3%)

Query: 27  RELLLTEKRRVDTCRHLFAVFKEYCISCELQLAGPEYESLQNFSSLPLTIAEELFSS-CT 85
           RELL T KRR +   +L     +  IS +++L GPE  +    SS    +AE LFSS  +
Sbjct: 163 RELLGTVKRRNEVYEYLRDAIGDSMISYDIELVGPEITACSTSSS----VAETLFSSDVS 218

Query: 86  QAILMDTSSSKKASVTVDNHLSPAHTLLQIQCIDQKGLFYDILRTSKDCDIQIAYGRFSS 145
                   +S   S+ VDN LS AHTL+ I C D KGL YDI+RT KD +IQI+YGRF+ 
Sbjct: 219 GEHSSGLHTSSNVSIAVDNSLSSAHTLIHITCQDHKGLLYDIMRTFKDFNIQISYGRFTI 278

Query: 146 SVKGHRNVDLFIQQSDGKKIIDPKLQLTLCSRLKAEMLHPFRVIVVNQGPDTELLVANPV 205
            +  +  +DLFI QSDG+KI+D      L +RL+AE+  P RV+++N+GPDTELLV NPV
Sbjct: 279 KLGKNCEIDLFIVQSDGRKILDSSKLNALITRLRAELQQPLRVVMMNRGPDTELLVTNPV 338

Query: 206 ELCGKGRPRVFYDVTLALKTLGICIFSAKIGRHSTEDRQWEVYRFLLDENCEVPIASAKS 265
           EL GKGRP+VF+D+ LALK +  CIFSA+IGRH T DR+WEVY+ L++E   +PI     
Sbjct: 339 ELSGKGRPQVFHDIALALKKIDTCIFSAEIGRHVTGDREWEVYKVLINEEDSLPIP---- 394

Query: 266 RKQIVDRVRKTLMGW 280
           R +I + V KTLMGW
Sbjct: 395 RSKIEEEVWKTLMGW 409