Jatropha Genome Database

JcCB0549911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0549911.10 - phase: 0 
         (139 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42670.1 | Symbols:  | unknown protein | chr2:17772004-177737...   178   1e-45
AT2G42670.2 | Symbols:  | unknown protein | chr2:17772004-177737...   177   2e-45
AT3G58670.2 | Symbols:  | unknown protein | chr3:21703693-217053...   170   3e-43
AT3G58670.1 | Symbols:  | unknown protein | chr3:21703693-217053...   170   3e-43
AT5G15120.1 | Symbols:  | unknown protein | chr5:4898814-4900351...   127   3e-30
AT5G39890.1 | Symbols:  | unknown protein | chr5:15974543-159760...   112   9e-26
AT1G18490.1 | Symbols:  | unknown protein | chr1:6367116-6368640...   109   6e-25

>AT2G42670.1 | Symbols:  | unknown protein | chr2:17772004-17773700
           REVERSE
          Length = 241

 Score =  178 bits (451), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 108/138 (78%), Gaps = 8/138 (5%)

Query: 4   VQKLYDACKESFSTNGPISEEALEKVRGILDQMKPSNVGLEQEAQLARQWKASIXXXXXX 63
            Q+LY+ CK SFS++GPI+E+ALEKVR +L+++KPS+VG+EQ+AQLAR     +      
Sbjct: 5   AQRLYNTCKASFSSDGPITEDALEKVRNVLEKIKPSDVGIEQDAQLARSRSGPLNERNG- 63

Query: 64  XXXXXSHQYPPTIKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSLLVKS 123
                S+Q PP IKYLHLHECD FSIGIFCMPPSS+IPLHNHPGMTVLSKL+YGS+ VKS
Sbjct: 64  -----SNQSPPAIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSMHVKS 118

Query: 124 YDWLD--LPGFDDPSQGQ 139
           YDWL+  L   +DPSQ +
Sbjct: 119 YDWLEPQLTEPEDPSQAR 136


>AT2G42670.2 | Symbols:  | unknown protein | chr2:17772004-17773700
           REVERSE
          Length = 242

 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/136 (63%), Positives = 107/136 (78%), Gaps = 8/136 (5%)

Query: 4   VQKLYDACKESFSTNGPISEEALEKVRGILDQMKPSNVGLEQEAQLARQWKASIXXXXXX 63
            Q+LY+ CK SFS++GPI+E+ALEKVR +L+++KPS+VG+EQ+AQLAR     +      
Sbjct: 5   AQRLYNTCKASFSSDGPITEDALEKVRNVLEKIKPSDVGIEQDAQLARSRSGPLNERNG- 63

Query: 64  XXXXXSHQYPPTIKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSLLVKS 123
                S+Q PP IKYLHLHECD FSIGIFCMPPSS+IPLHNHPGMTVLSKL+YGS+ VKS
Sbjct: 64  -----SNQSPPAIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSMHVKS 118

Query: 124 YDWLD--LPGFDDPSQ 137
           YDWL+  L   +DPSQ
Sbjct: 119 YDWLEPQLTEPEDPSQ 134


>AT3G58670.2 | Symbols:  | unknown protein | chr3:21703693-21705314
           REVERSE
          Length = 242

 Score =  170 bits (430), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/138 (60%), Positives = 99/138 (71%), Gaps = 8/138 (5%)

Query: 4   VQKLYDACKESFSTNGPISEEALEKVRGILDQMKPSNVGLEQEAQLARQWKASIXXXXXX 63
           +Q+L++ CK S S NGP+SEEAL+KVR +L+++KPS+VGLEQEAQL R W          
Sbjct: 5   IQRLFNTCKSSLSPNGPVSEEALDKVRNVLEKIKPSDVGLEQEAQLVRNWPGP------G 58

Query: 64  XXXXXSHQYPPTIKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSLLVKS 123
                +H   P IKYL LHECD FSIGIFCMPP SIIPLHNHPGMTVLSKL+YGS+ VKS
Sbjct: 59  NERNGNHHSLPAIKYLQLHECDSFSIGIFCMPPGSIIPLHNHPGMTVLSKLVYGSMHVKS 118

Query: 124 YDWL--DLPGFDDPSQGQ 139
           YDW   D    DDP Q +
Sbjct: 119 YDWAEPDQSELDDPLQAR 136


>AT3G58670.1 | Symbols:  | unknown protein | chr3:21703693-21705314
           REVERSE
          Length = 242

 Score =  170 bits (430), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/138 (60%), Positives = 99/138 (71%), Gaps = 8/138 (5%)

Query: 4   VQKLYDACKESFSTNGPISEEALEKVRGILDQMKPSNVGLEQEAQLARQWKASIXXXXXX 63
           +Q+L++ CK S S NGP+SEEAL+KVR +L+++KPS+VGLEQEAQL R W          
Sbjct: 5   IQRLFNTCKSSLSPNGPVSEEALDKVRNVLEKIKPSDVGLEQEAQLVRNWPGP------G 58

Query: 64  XXXXXSHQYPPTIKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSLLVKS 123
                +H   P IKYL LHECD FSIGIFCMPP SIIPLHNHPGMTVLSKL+YGS+ VKS
Sbjct: 59  NERNGNHHSLPAIKYLQLHECDSFSIGIFCMPPGSIIPLHNHPGMTVLSKLVYGSMHVKS 118

Query: 124 YDWL--DLPGFDDPSQGQ 139
           YDW   D    DDP Q +
Sbjct: 119 YDWAEPDQSELDDPLQAR 136


>AT5G15120.1 | Symbols:  | unknown protein | chr5:4898814-4900351
           FORWARD
          Length = 293

 Score =  127 bits (318), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 87/139 (62%), Gaps = 16/139 (11%)

Query: 3   VVQKLYDACKESFSTNGP---ISEEALEKVRGILDQMKPSNVGLEQEAQLARQWKASIXX 59
            V++L++ CKE FS  GP    SE+ ++++R ILD MKP +VGL       R        
Sbjct: 57  AVRRLFNTCKEVFSNGGPGVIPSEDKIQQLREILDDMKPEDVGLTPTMPYFRPNSG---- 112

Query: 60  XXXXXXXXXSHQYPPTIKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSL 119
                      +  P I YLHLH+CD+FSIGIFC+PPS +IPLHNHPGMTV SKLL+G++
Sbjct: 113 --------VEARSSPPITYLHLHQCDQFSIGIFCLPPSGVIPLHNHPGMTVFSKLLFGTM 164

Query: 120 LVKSYDW-LDLPGFDDPSQ 137
            +KSYDW +D P  D  ++
Sbjct: 165 HIKSYDWVVDAPMRDSKTR 183


>AT5G39890.1 | Symbols:  | unknown protein | chr5:15974543-15976013
           FORWARD
          Length = 276

 Score =  112 bits (279), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 18/127 (14%)

Query: 4   VQKLYDACKESFS--TNGPI-SEEALEKVRGILDQMKPSNVGLEQEAQLARQWKASIXXX 60
           VQKL+D CK+ F+   +G + S+E +E +R +LD++KP +VG+  +    R         
Sbjct: 47  VQKLFDTCKKVFADGKSGTVPSQENIEMLRAVLDEIKPEDVGVNPKMSYFRSTVTG---- 102

Query: 61  XXXXXXXXSHQYPPTIKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSLL 120
                        P + YLH++ C RFSI IFC+PPS +IPLHNHP MTV SKLL+G++ 
Sbjct: 103 -----------RSPLVTYLHIYACHRFSICIFCLPPSGVIPLHNHPEMTVFSKLLFGTMH 151

Query: 121 VKSYDWL 127
           +KSYDW+
Sbjct: 152 IKSYDWV 158


>AT1G18490.1 | Symbols:  | unknown protein | chr1:6367116-6368640
           FORWARD
          Length = 282

 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 83/131 (63%), Gaps = 7/131 (5%)

Query: 2   PVVQKLYDACKESFSTNGPI-SEEALEKVRGILDQMKPSNVGLEQEAQLA-RQWKASIXX 59
           P VQ+LYD CKE+F+   P  +  A++K+  +LD + P++VGLE+ +Q   R +  S   
Sbjct: 33  PKVQELYDLCKETFTGKAPSPASMAIQKLCSVLDSVSPADVGLEEVSQDDDRGYGVS--- 89

Query: 60  XXXXXXXXXSHQYPPTIKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSL 119
                      ++   I +L +HECD F++ IFC P SS+IPLH+HP M V SK+LYGSL
Sbjct: 90  --GVSRFNRVGRWAQPITFLDIHECDTFTMCIFCFPTSSVIPLHDHPEMAVFSKILYGSL 147

Query: 120 LVKSYDWLDLP 130
            VK+YDW++ P
Sbjct: 148 HVKAYDWVEPP 158