Jatropha Genome Database
- JcCB0549901.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0549901.10 + phase: 1 /partial
(166 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G59040.2 | Symbols: | pentatricopeptide (PPR) repeat-contain... 148 1e-36
AT3G59040.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 148 2e-36
AT5G61990.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 60 5e-10
AT1G03560.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 58 3e-09
AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 3e-08
AT1G73710.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 4e-08
AT2G31400.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 4e-08
AT4G31850.1 | Symbols: PGR3 | PGR3 (PROTON GRADIENT REGULATION 3... 54 5e-08
AT1G62930.1 | Symbols: | INVOLVED IN: biological_process unknow... 54 6e-08
AT1G63630.2 | Symbols: | pentatricopeptide (PPR) repeat-contain... 53 8e-08
AT3G22670.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 53 8e-08
AT5G61400.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 53 8e-08
AT1G63630.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 53 9e-08
AT1G62680.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 53 9e-08
AT1G62670.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 1e-07
AT1G79490.1 | Symbols: EMB2217 | EMB2217 (embryo defective 2217)... 52 1e-07
AT1G62910.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 2e-07
AT5G41170.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 2e-07
AT1G63150.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 2e-07
AT5G28370.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 2e-07
AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 2e-07
AT3G62470.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 5e-07
AT3G49730.1 | Symbols: | EXPRESSED IN: 19 plant structures; EXP... 50 5e-07
AT1G63330.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 7e-07
AT5G08310.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 7e-07
AT4G30825.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 8e-07
AT1G63130.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 9e-07
AT5G16640.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 9e-07
AT3G61520.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 1e-06
AT1G18900.2 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 1e-06
AT1G18900.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 1e-06
AT3G53700.1 | Symbols: MEE40 | MEE40 (maternal effect embryo arr... 49 1e-06
AT5G28460.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 1e-06
AT1G74750.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 1e-06
AT5G13770.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 1e-06
AT3G62540.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 1e-06
AT5G14820.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 1e-06
AT1G51965.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 2e-06
AT4G16390.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 48 2e-06
AT1G64100.2 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 3e-06
AT5G39710.1 | Symbols: EMB2745 | EMB2745 (EMBRYO DEFECTIVE 2745)... 48 3e-06
AT1G64100.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 3e-06
AT1G77360.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 3e-06
AT1G63400.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 4e-06
AT5G27270.1 | Symbols: EMB976 | EMB976 (EMBRYO DEFECTIVE 976) | ... 47 4e-06
AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 47 5e-06
AT3G04130.2 | Symbols: | pentatricopeptide (PPR) repeat-contain... 47 6e-06
AT3G04130.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 47 6e-06
AT1G05670.2 | Symbols: | UDP-glucoronosyl/UDP-glucosyl transfer... 47 8e-06
AT1G05670.1 | Symbols: | UDP-glucoronosyl/UDP-glucosyl transfer... 47 8e-06
AT5G21222.1 | Symbols: | protein kinase family protein | chr5:7... 46 8e-06
AT1G61870.1 | Symbols: PPR336 | PPR336 (pentatricopeptide repeat... 46 9e-06
AT4G11690.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 46 1e-05
>AT3G59040.2 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:21821495-21823919 REVERSE
Length = 590
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 82/101 (81%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTYGTLIKGYAK D+E MM+ YE+M+LSG+KANQTI TTIMDA G+ K+FGSA+ WYKE
Sbjct: 427 VTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKE 486
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLVGYSDNGAS 101
ME GVPPDQKAKNVLLSLA T DE EEA +L G + A+
Sbjct: 487 MESCGVPPDQKAKNVLLSLASTQDELEEAKELTGIRNETAT 527
>AT3G59040.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:21821495-21824233 REVERSE
Length = 583
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 82/101 (81%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTYGTLIKGYAK D+E MM+ YE+M+LSG+KANQTI TTIMDA G+ K+FGSA+ WYKE
Sbjct: 420 VTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKE 479
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLVGYSDNGAS 101
ME GVPPDQKAKNVLLSLA T DE EEA +L G + A+
Sbjct: 480 MESCGVPPDQKAKNVLLSLASTQDELEEAKELTGIRNETAT 520
>AT5G61990.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:24900186-24903110 REVERSE
Length = 974
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
TYGT++KG DL+ +EM SG + N I+TT++ +N FG A+ KEM
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEM 478
Query: 62 ERHGVPPDQKAKN-VLLSLAKTADEKEEANQLVGYSDNG 99
+ G+ PD N +++ L+K E + LV +NG
Sbjct: 479 KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENG 517
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
+ Y L+ G+ + ++E + +EM + G+ N + TI+D + K+ D A + E
Sbjct: 663 IIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDE 722
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLVGYSDNGAS 101
M+ G+ PD L+ ++ E A + G + G +
Sbjct: 723 MKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCA 763
>AT1G03560.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:890428-892410 REVERSE
Length = 660
Score = 58.2 bits (139), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY T+IKGY K + M+K +M+ G +A++ + T++ A + DFGS V+ Y+E
Sbjct: 258 VTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQE 317
Query: 61 MERHG--VPP 68
M+ G VPP
Sbjct: 318 MDEKGIQVPP 327
>AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23385324-23387167 REVERSE
Length = 590
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
V Y TLIKG+ K K +E M+ + EM G+ N +TT++ + +D +A +K+
Sbjct: 357 VAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 416
Query: 61 MERHGVPPDQKAKNVLL 77
M GV PD N+LL
Sbjct: 417 MVSDGVHPDIMTYNILL 433
>AT1G73710.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:27721190-27724165 FORWARD
Length = 991
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
T+ TLI Y K L + + EM SGV + F T++ G + A S K+M
Sbjct: 307 TFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKM 366
Query: 62 ERHGVPPDQKAKNVLLSLAKTADEKEEA 89
E G+ PD K N+LLSL A + E A
Sbjct: 367 EEKGISPDTKTYNILLSLHADAGDIEAA 394
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
TY +I Y ++ L + + YE M+ +GVK N+ ++ ++++ ++ A+ +++ M
Sbjct: 587 TYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMM 646
Query: 62 ERHGVPPDQKAKNVLLSLAK 81
E HGV Q VL SL K
Sbjct: 647 EEHGV---QSNHIVLTSLIK 663
>AT2G31400.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:13387201-13390550 REVERSE
Length = 918
Score = 53.9 bits (128), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
+TY TLI GY+K + M+ + E + +G++A+ +++ ++DA KN GSAVS E
Sbjct: 515 LTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDE 574
Query: 61 MERHGVPPDQKAKNVLL-SLAKTADEKEEANQLVGYSDNGASRF 103
M + G+ P+ N ++ + ++A A+ YS+ G+ F
Sbjct: 575 MTKEGISPNVVTYNSIIDAFGRSATMDRSAD----YSNGGSLPF 614
>AT4G31850.1 | Symbols: PGR3 | PGR3 (PROTON GRADIENT REGULATION 3) |
chr4:15403020-15406358 FORWARD
Length = 1112
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
TY TLI G ++ L++ ++ + M+ GVK + +D +GK+ D SA+ +++M
Sbjct: 400 TYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKM 459
Query: 62 ERHGVPPDQKAKNV-LLSLAKTADEKEEANQLVGYSDNG 99
+ G+ P+ A N L SLAK ++E G D G
Sbjct: 460 KTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIG 498
>AT1G62930.1 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14
growth stages; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: pentatricopeptide
(PPR) repeat-containing protein (TAIR:AT1G63130.1); Has
29147 Blast hits to 6292 proteins in 192 species: Archae
- 8; Bacteria - 22; Metazoa - 1258; Fungi - 858; Plants
- 25291; Viruses - 0; Other Eukaryotes - 1710 (source:
NCBI BLink). | chr1:23306534-23308423 FORWARD
Length = 629
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY TLIKG+ K K +E M+ + EM G+ N + T++ + D A +K+
Sbjct: 396 VTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKK 455
Query: 61 MERHGVPPDQKAKNVLL 77
M GVPPD ++LL
Sbjct: 456 MVSDGVPPDIITYSILL 472
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
TYGT++ G K D++ + ++M+ ++A+ I+TTI+DA K+ A++ + EM
Sbjct: 222 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEM 281
Query: 62 ERHGVPPDQKAKNVLLSLAKTADEKEEANQLV 93
+ G+ P+ N L+ +A++L+
Sbjct: 282 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLL 313
>AT1G63630.2 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23587613-23588220 FORWARD
Length = 152
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VT+ TLI GY K K ++N M+ + EM G+ AN +TT++ + D +A E
Sbjct: 46 VTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNE 105
Query: 61 MERHGVPPDQKAKNVLLS 78
M GV PD + +L+
Sbjct: 106 MISCGVAPDYITFHCMLA 123
>AT3G22670.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:8017771-8019459 REVERSE
Length = 562
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY + ++ Y K D + + EEM+ +G N +T +M + GK+K A+ Y++
Sbjct: 309 VTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEK 368
Query: 61 MERHGVPPDQKAKNVLLS-LAKTADEKEEANQLVGYSDNGASR 102
M+ G PD K + L+ L+KT K+ A ++ G R
Sbjct: 369 MKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRR 411
>AT5G61400.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:24681550-24683514 FORWARD
Length = 654
Score = 53.1 bits (126), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
+T+ TLI GY ++D++ M Y EM + G+ + +T ++DAH K + A+ Y +
Sbjct: 445 ITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSD 504
Query: 61 MERHGVPPD 69
M G+ P+
Sbjct: 505 MLEAGIHPN 513
Score = 52.8 bits (125), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
TY +LI GY K ++E + EM SGV+ N F+T++D + +D +A+ Y EM
Sbjct: 411 TYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEM 470
Query: 62 ERHGVPPDQKAKNVLLSLAKTADEKEEANQLVGYSD 97
G+ PD L+ +EA +L YSD
Sbjct: 471 TIKGIVPDVVTYTALIDAHFKEANMKEALRL--YSD 504
Score = 46.2 bits (108), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
V +GTL+ G+ K ++L + M GV N ++ ++ H K+ + AV E
Sbjct: 305 VVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSE 364
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
ME + PD +L++ D+ EAN+L
Sbjct: 365 MESLNLSPDVFTYTILINGLCIEDQVAEANRL 396
>AT1G63630.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23587298-23588220 FORWARD
Length = 257
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VT+ TLI GY K K ++N M+ + EM G+ AN +TT++ + D +A E
Sbjct: 151 VTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNE 210
Query: 61 MERHGVPPDQKAKNVLLS 78
M GV PD + +L+
Sbjct: 211 MISCGVAPDYITFHCMLA 228
>AT1G62680.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:
shoot apex, leaf whorl, flower, seed; EXPRESSED DURING:
F mature embryo stage, petal differentiation and
expansion stage; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: pentatricopeptide
(PPR) repeat-containing protein (TAIR:AT1G63130.1); Has
26421 Blast hits to 6237 proteins in 192 species: Archae
- 5; Bacteria - 22; Metazoa - 845; Fungi - 755; Plants -
23373; Viruses - 0; Other Eukaryotes - 1421 (source:
NCBI BLink). | chr1:23208247-23209893 REVERSE
Length = 548
Score = 52.8 bits (125), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
V+Y TLI G+ K K +E+ MK + EM G+ +N + T++ + D A ++ +
Sbjct: 331 VSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ 390
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLVGYSD 97
M+ G+ PD N+L L D E LV + D
Sbjct: 391 MDFFGISPDIWTYNIL--LGGLCDNGELEKALVIFED 425
>AT1G62670.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23204773-23206665 REVERSE
Length = 630
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY TLIKG+ K K +E M+ + EM G+ N + ++ + D A +KE
Sbjct: 397 VTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKE 456
Query: 61 MERHGVPPDQKAKNVLL 77
M GVPP+ N LL
Sbjct: 457 MVSDGVPPNIMTYNTLL 473
>AT1G79490.1 | Symbols: EMB2217 | EMB2217 (embryo defective 2217) |
chr1:29900617-29903127 FORWARD
Length = 836
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 52/98 (53%)
Query: 5 TLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEMERH 64
+LI YAK L+ ++ ++EM+ SG + N ++T I+++H K+ A++ +K+ME+
Sbjct: 388 SLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKA 447
Query: 65 GVPPDQKAKNVLLSLAKTADEKEEANQLVGYSDNGASR 102
G P + LL + + + + A ++ N R
Sbjct: 448 GFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLR 485
>AT1G62910.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23299060-23303162 FORWARD
Length = 1133
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY TLIKG+ K K +E M+ + EM G+ N +TT++ + +D +A +K+
Sbjct: 399 VTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 458
Query: 61 MERHGVPPDQKAKNVLL 77
M GV P+ N+LL
Sbjct: 459 MVSVGVHPNILTYNILL 475
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY TLI G+ K K ++ M+ + EM G+ N +TT++ + +D +A +K+
Sbjct: 999 VTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 1058
Query: 61 MERHGVPPDQKAKNVLL 77
M GV P+ N+LL
Sbjct: 1059 MVSVGVHPNILTYNILL 1075
Score = 47.8 bits (112), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTYGT++ G K D++ + ++M+ ++A+ I+ TI+D K K A++ + E
Sbjct: 224 VTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTE 283
Query: 61 MERHGVPPDQKAKNVLLS 78
M+ G+ PD + L+S
Sbjct: 284 MDNKGIRPDVFTYSSLIS 301
>AT5G41170.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:16478860-16480443 REVERSE
Length = 527
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
V Y +LI G+ K K +++ MK + EM G+ N +TT++ G+ A +
Sbjct: 318 VAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSH 377
Query: 61 MERHGVPPDQKAKNVLL 77
M GVPP+ + NVLL
Sbjct: 378 MVSRGVPPNIRTYNVLL 394
Score = 48.5 bits (114), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VT+ +LI G+ +E M +M G+K + ++TTI+D+ KN A+S + +
Sbjct: 143 VTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQ 202
Query: 61 MERHGVPPD 69
ME +G+ PD
Sbjct: 203 MENYGIRPD 211
>AT1G63150.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23419399-23421288 FORWARD
Length = 629
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTYGT++ G K D++ + +M+ + +KAN IF TI+D+ K + AV + E
Sbjct: 224 VTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTE 283
Query: 61 MERHGVPPDQKAKNVLLS 78
ME G+ P+ N L++
Sbjct: 284 METKGIRPNVVTYNSLIN 301
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
TY TLI G+ K K +E+ ++ + EM G+ N +TTI+ + D SA +K+M
Sbjct: 400 TYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQM 459
Query: 62 ERHGVPPDQKAKNVLL 77
+ VP D ++LL
Sbjct: 460 VSNRVPTDIMTYSILL 475
>AT5G28370.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:10332375-10334558 REVERSE
Length = 727
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQL-SGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
TYG +I Y + +L+ +K +++M L S V N I+ +++A K +FG A+S +E
Sbjct: 618 TYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEE 677
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLVGYSDNGASRFVN 105
M+ V P+ + N L K +EK + L+ D VN
Sbjct: 678 MKMKMVRPNVETYNALF---KCLNEKTQGETLLKLMDEMVEHLVN 719
>AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23177294-23179198 REVERSE
Length = 634
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 50/95 (52%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY TLIKG+ K K +E+ + + EM G+ + +TT++ + D +A +K+
Sbjct: 401 VTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ 460
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLVGY 95
M GVPPD ++LL + E+A ++ Y
Sbjct: 461 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDY 495
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 51/93 (54%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTYG ++ G K D + + +M+ + ++A+ IF TI+D+ K + A++ +KE
Sbjct: 226 VTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKE 285
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLV 93
ME G+ P+ + L+S + +A+QL+
Sbjct: 286 METKGIRPNVVTYSSLISCLCSYGRWSDASQLL 318
>AT3G62470.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:23106600-23108399 REVERSE
Length = 599
Score = 50.4 bits (119), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 45/91 (49%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
+Y +I+ + K +E ++ +++M SG++ + ++T ++ G K + KEM
Sbjct: 370 SYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEM 429
Query: 62 ERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
+ G PPD K N L+ L E A ++
Sbjct: 430 QEKGHPPDGKTYNALIKLMANQKMPEHATRI 460
>AT3G49730.1 | Symbols: | EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 9 growth stages; CONTAINS InterPro
DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885);
BEST Arabidopsis thaliana protein match is:
pentatricopeptide (PPR) repeat-containing protein
(TAIR:AT5G65820.1); Has 25923 Blast hits to 13097
proteins in 1477 species: Archae - 105; Bacteria - 3757;
Metazoa - 995; Fungi - 405; Plants - 17052; Viruses -
21; Other Eukaryotes - 3588 (source: NCBI BLink). |
chr3:18445730-18447646 REVERSE
Length = 638
Score = 50.4 bits (119), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY LI G+ K ++ ++M+ GV +Q + IM AH K + F + ++
Sbjct: 343 VTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEK 402
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
M+R G PD NV++ LA E +EA +L
Sbjct: 403 MKRRGCHPDLLIYNVVIRLACKLGEVKEAVRL 434
>AT1G63330.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23489628-23491519 FORWARD
Length = 558
Score = 50.1 bits (118), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
TY TLIKG+ K K +E+ + + EM G+ + +TT++ + D +A +K+M
Sbjct: 326 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 385
Query: 62 ERHGVPPDQKAKNVLLSLAKTADEKEEANQLVGY 95
GVPPD ++LL + E+A ++ Y
Sbjct: 386 VSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDY 419
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 51/93 (54%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTYG ++ G K D++ +M+ + ++A+ IF TI+D+ K + A++ +KE
Sbjct: 150 VTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKE 209
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLV 93
ME G+ P+ + L+S + +A+QL+
Sbjct: 210 METKGIRPNVVTYSSLISCLCSYGRWSDASQLL 242
>AT5G08310.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:2670134-2675254 REVERSE
Length = 1280
Score = 50.1 bits (118), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
TY LI G+ K ++ + +E+M+ G+ A+ ++ ++ K+KD A+S Y E+
Sbjct: 285 TYCVLIHGFVKESRIDKAFQLFEKMRRMGMNADIALYDVLIGGLCKHKDLEMALSLYLEI 344
Query: 62 ERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
+R G+PPD + +L L + E+ E +++
Sbjct: 345 KRSGIPPD---RGILGKLLCSFSEESELSRI 372
>AT4G30825.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:15009605-15012319 FORWARD
Length = 904
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
++Y T+I Y K KD NM + MQ G + + T++DA+GK+K S K
Sbjct: 734 ISYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKR 793
Query: 61 MERHGVPPDQKAKNVLLSL 79
M++ PD N+++++
Sbjct: 794 MKKSTSGPDHYTYNIMINI 812
>AT1G63130.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23412854-23414746 FORWARD
Length = 630
Score = 49.7 bits (117), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY TLIKG+ K K ++ M+ + EM G+ N +TT++ + ++ +A +K+
Sbjct: 397 VTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQ 456
Query: 61 MERHGVPPDQKAKNVLL 77
M GV PD ++LL
Sbjct: 457 MVSDGVLPDIMTYSILL 473
>AT5G16640.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:5461031-5462545 FORWARD
Length = 504
Score = 49.7 bits (117), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 50/93 (53%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VT+G+L+ G+ + + + + +++M G K N I+ TI+D K+K +A+
Sbjct: 152 VTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNR 211
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLV 93
ME+ G+ PD N L+S ++ +A ++V
Sbjct: 212 MEKDGIGPDVVTYNSLISGLCSSGRWSDATRMV 244
>AT3G61520.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:22768974-22771274 REVERSE
Length = 766
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQL-SGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
TYG +I Y + +L+ +K +++M L S V N I+ +++A K +FG A+S +E
Sbjct: 618 TYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEE 677
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLVGYSD 97
M+ V P+ + N L K +EK + L+ D
Sbjct: 678 MKMKMVRPNVETYNALF---KCLNEKTQGETLLKLMD 711
>AT1G18900.2 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:6529778-6532360 FORWARD
Length = 860
Score = 49.7 bits (117), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 45/92 (48%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY LI Y + L M + +MQ +G K ++ + T++D H K A+ Y+
Sbjct: 400 VTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQR 459
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
M+ G+ PD +V+++ A A++L
Sbjct: 460 MQAGGLSPDTFTYSVIINCLGKAGHLPAAHKL 491
>AT1G18900.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:6529778-6532360 FORWARD
Length = 860
Score = 49.7 bits (117), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 45/92 (48%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY LI Y + L M + +MQ +G K ++ + T++D H K A+ Y+
Sbjct: 400 VTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQR 459
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
M+ G+ PD +V+++ A A++L
Sbjct: 460 MQAGGLSPDTFTYSVIINCLGKAGHLPAAHKL 491
>AT3G53700.1 | Symbols: MEE40 | MEE40 (maternal effect embryo arrest
40) | chr3:19900303-19902567 FORWARD
Length = 754
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
+TY TLI G+ K + ++EM++ GV N + T++D K++ A +
Sbjct: 471 ITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 530
Query: 61 MERHGVPPDQKAKNVLLS-LAKTADEKEEANQLVGYSDNG 99
M G PD+ N LL+ + D K+ A+ + + NG
Sbjct: 531 MIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570
>AT5G28460.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:10374927-10377227 FORWARD
Length = 766
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQL-SGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
TYG +I Y + +L+ +K +++M L S V N I+ +++A K +FG A+S +E
Sbjct: 618 TYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEE 677
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLVGYSD 97
M+ V P+ + N L K +EK + L+ D
Sbjct: 678 MKMKMVRPNVETYNALF---KCLNEKTQGETLLKLMD 711
>AT1G74750.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:28086800-28089367 FORWARD
Length = 855
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY LI Y + L+ M + +MQ +G + ++ + T++D H K A+ Y+
Sbjct: 395 VTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQR 454
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
M+ G+ PD +V+++ A A++L
Sbjct: 455 MQEAGLSPDTFTYSVIINCLGKAGHLPAAHRL 486
>AT5G13770.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:4445461-4447290 FORWARD
Length = 609
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
V Y ++ Y K + L + ++ +M+ G K N I+ +++D HG+ D A +KE
Sbjct: 424 VAYSNIMDMYGKTRRLSDAVRLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKE 483
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
M+R V PD+ + ++S + E E +L
Sbjct: 484 MKRAKVLPDKVSYTSMISAYNRSKELERCVEL 515
>AT3G62540.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:23133514-23135313 REVERSE
Length = 599
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 44/91 (48%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
+Y +I+ + K +E ++ +++M SG++ + ++T ++ G K + KEM
Sbjct: 370 SYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEM 429
Query: 62 ERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
+ G PPD K N L+ L E ++
Sbjct: 430 QEKGHPPDGKTYNALIKLMANQKMPEHGTRI 460
>AT5G14820.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:4792072-4793868 REVERSE
Length = 598
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 44/91 (48%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
+Y +I+ + K +E ++ +++M SG++ + ++T ++ G K + KEM
Sbjct: 369 SYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEM 428
Query: 62 ERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
+ G PPD K N L+ L E ++
Sbjct: 429 QEKGHPPDGKTYNALIKLMANQKMPEHGTRI 459
>AT1G51965.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:19312078-19314145 REVERSE
Length = 650
Score = 48.5 bits (114), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY TL++ + K + +E +EEM + G + N + ++D KN AV Y +
Sbjct: 548 VTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSK 607
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEK 86
M++ G+ PD VL L + K
Sbjct: 608 MKQQGLTPDSITYTVLERLQSVSHGK 633
>AT4G16390.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885), Smr protein/MutS2 C-terminal
(InterPro:IPR002625); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT5G46580.1); Has 19821 Blast hits to 5782
proteins in 183 species: Archae - 2; Bacteria - 24;
Metazoa - 276; Fungi - 350; Plants - 18437; Viruses - 0;
Other Eukaryotes - 732 (source: NCBI BLink). |
chr4:9257985-9260093 FORWARD
Length = 702
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
+ Y +K + K KDLE K ++EM G+K + FTTI+ +N AV W+++
Sbjct: 176 ILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEK 235
Query: 61 MERHGVPPD 69
M G PD
Sbjct: 236 MSSFGCEPD 244
>AT1G64100.2 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23791585-23795563 FORWARD
Length = 806
Score = 48.1 bits (113), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VT+ T+I Y + K ++ M+ E+ G+ AN T + T++ + + +A ++E
Sbjct: 433 VTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQE 492
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
M HGV PD N+LL ++ EEA +L
Sbjct: 493 MISHGVCPDTITCNILLYGFCENEKLEEALEL 524
>AT5G39710.1 | Symbols: EMB2745 | EMB2745 (EMBRYO DEFECTIVE 2745) |
chr5:15895729-15897972 FORWARD
Length = 747
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
V+Y T++ G+ + D++ ++ EM G+K + +++++ + + A Y+E
Sbjct: 451 VSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEE 510
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
M R G+PPD+ L++ + E+A QL
Sbjct: 511 MLRVGLPPDEFTYTALINAYCMEGDLEKALQL 542
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
+TY +LI+G+ + + + YEEM G+ ++ +T +++A+ D A+ + E
Sbjct: 486 ITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNE 545
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLV 93
M GV PD +VL++ EA +L+
Sbjct: 546 MVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
>AT1G64100.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23791585-23793641 FORWARD
Length = 666
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VT+ T+I Y + K ++ M+ E+ G+ AN T + T++ + + +A ++E
Sbjct: 433 VTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQE 492
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
M HGV PD N+LL ++ EEA +L
Sbjct: 493 MISHGVCPDTITCNILLYGFCENEKLEEALEL 524
>AT1G77360.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:29071983-29073428 REVERSE
Length = 481
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 3 YGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEME 62
Y L+ Y LE + + EM+ SG+KA+ +F +++ A K + KEM+
Sbjct: 274 YSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMK 333
Query: 63 RHGVPPDQKAKNVLLSLAKTADEKEEA 89
GV P+ K+ N++L EK+EA
Sbjct: 334 SKGVTPNSKSCNIILRHLIERGEKDEA 360
>AT1G63400.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23507320-23509053 FORWARD
Length = 577
Score = 47.8 bits (112), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY TLI G+ K K ++ ++ + EM G+ N +TT++ + +D +A +K+
Sbjct: 401 VTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 460
Query: 61 MERHGVPPDQKAKNVLL 77
M GV P+ N LL
Sbjct: 461 MVSDGVHPNIMTYNTLL 477
Score = 47.0 bits (110), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 51/93 (54%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTYG ++ G K D++ +M+ + ++AN I++T++D+ K + A++ + E
Sbjct: 226 VTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTE 285
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLV 93
ME GV P+ + L+S + +A++L+
Sbjct: 286 MENKGVRPNVITYSSLISCLCNYERWSDASRLL 318
>AT5G27270.1 | Symbols: EMB976 | EMB976 (EMBRYO DEFECTIVE 976) |
chr5:9605650-9609625 FORWARD
Length = 1038
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 50/92 (54%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
TY T+I Y + L+ ++ + + SG+ ++ I+T ++ +GK A+S + EM
Sbjct: 811 TYNTMISVYGRGLQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEM 870
Query: 62 ERHGVPPDQKAKNVLLSLAKTADEKEEANQLV 93
++ G+ P + N+++ + T+ E ++L+
Sbjct: 871 QKKGIKPGTPSYNMMVKICATSRLHHEVDELL 902
>AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23388884-23390728 REVERSE
Length = 614
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY TLI G+ K K + + M+ + +M G+ N +TT++ + D +A +K+
Sbjct: 381 VTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQ 440
Query: 61 MERHGVPPDQKAKNVLL 77
M GV P+ N LL
Sbjct: 441 MVSDGVHPNIMTYNTLL 457
>AT3G04130.2 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:1084136-1085662 FORWARD
Length = 508
Score = 46.6 bits (109), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
++Y T+I+ Y + + + + EM+ +G N +TTIM + K+F A+
Sbjct: 260 ISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATR 319
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
M+R G PD N L+ A EEA ++
Sbjct: 320 MKRSGCKPDSLFYNCLIHTLARAGRLEEAERV 351
>AT3G04130.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:1084136-1085662 FORWARD
Length = 508
Score = 46.6 bits (109), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
++Y T+I+ Y + + + + EM+ +G N +TTIM + K+F A+
Sbjct: 260 ISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATR 319
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
M+R G PD N L+ A EEA ++
Sbjct: 320 MKRSGCKPDSLFYNCLIHTLARAGRLEEAERV 351
>AT1G05670.2 | Symbols: | UDP-glucoronosyl/UDP-glucosyl transferase
family protein | chr1:1698574-1702715 REVERSE
Length = 1184
Score = 46.6 bits (109), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
TY +++ G K ++E +K E + +G+ A+ +TT+MDA+ K+ + A KEM
Sbjct: 936 TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM 995
Query: 62 ERHGVPPDQKAKNVLLS 78
G+ P NVL++
Sbjct: 996 LGKGLQPTIVTFNVLMN 1012
>AT1G05670.1 | Symbols: | UDP-glucoronosyl/UDP-glucosyl transferase
family protein | chr1:1698574-1702715 REVERSE
Length = 1184
Score = 46.6 bits (109), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
TY +++ G K ++E +K E + +G+ A+ +TT+MDA+ K+ + A KEM
Sbjct: 936 TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM 995
Query: 62 ERHGVPPDQKAKNVLLS 78
G+ P NVL++
Sbjct: 996 LGKGLQPTIVTFNVLMN 1012
>AT5G21222.1 | Symbols: | protein kinase family protein |
chr5:7209422-7213700 FORWARD
Length = 831
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
+ +LIKG+ I D++ + + + M+ GVK + F+T+M+A D Y +M
Sbjct: 568 VFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDM 627
Query: 62 ERHGVPPDQKAKNVLLSLAKTADEKEEANQLV 93
G+ PD A ++L A E E+A Q++
Sbjct: 628 LEGGIDPDIHAFSILAKGYARAGEPEKAEQIL 659
>AT1G61870.1 | Symbols: PPR336 | PPR336 (pentatricopeptide repeat
336) | chr1:22865326-22866552 REVERSE
Length = 408
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY LI G+ D E K ++ M G K + + T++ K DF +A+S KE
Sbjct: 293 VTYSHLIHGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKE 352
Query: 61 -MERHGVPPDQKAKNVLLSLAKTADEK-EEANQLVG 94
ME++ VP K+++ LAK D K EEA +L+G
Sbjct: 353 SMEKNWVPSFSIMKSLVNGLAK--DSKVEEAKELIG 386
>AT4G11690.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:7056254-7057954 FORWARD
Length = 566
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY L+ G+ + D K +EM+ G+K ++ +T ++D ++ + A+
Sbjct: 374 VTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLS 433
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
ME G+ PD +VL+ + EA++L
Sbjct: 434 MEELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465