Jatropha Genome Database

JcCB0549541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0549541.10 - phase: 0 /pseudo
         (417 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11880.1 | Symbols:  | diaminopimelate decarboxylase, putativ...    69   6e-12
AT3G14390.1 | Symbols:  | diaminopimelate decarboxylase, putativ...    68   9e-12

>AT5G11880.1 | Symbols:  | diaminopimelate decarboxylase, putative /
           DAP carboxylase, putative | chr5:3827806-3829942 REVERSE
          Length = 489

 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 126/288 (43%), Gaps = 22/288 (7%)

Query: 51  EAEPFYLIDLGVVIRLMDKWNQSLPNVKPF--YAVKCNTEPALLLSLATLGANFDCASQA 108
           E  PFYL     + R ++ + ++L  V+    YA+K N    +L  L +LG      S  
Sbjct: 95  EKRPFYLYSKPQITRNLEAYKEALEGVRSVIGYAIKANNNLKILEHLRSLGCGAVLVSGN 154

Query: 109 EIETILGLGVNPDRIVYANPCKSASHIKYAARVGVNL---TTFDSKQEIDKIKKWHPKCE 165
           E+   L  G +P + ++    KS   +  AA+ GV +   + FD    ++  +    +  
Sbjct: 155 ELRLALLAGFDPTKCIFNGNGKSLEDLVLAAQEGVFVNVDSEFDLNNIVEASRISGKQVN 214

Query: 166 LLLRLK--VPSENSSWRSFGN---KYGALTEEVASLLQH--ANQAGLKVVGVSFHVGSIA 218
           +LLR+   V  +   + + GN   K+G   E++   L    A+   LK+VG   H+GS  
Sbjct: 215 VLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDEVKAHPKELKLVGAHCHLGSTI 274

Query: 219 SDPQVYHSAIATARFAFDTAIKLEMPAMHILNIGGG-----FRANPLFDEIGKTVNDSVQ 273
           +   ++  A A     +   I+ +   +  LNIGGG     + A  +       +N +V+
Sbjct: 275 TKVDIFRDA-AVLMIEYIDEIRRQGFEVSYLNIGGGLGIDYYHAGAVLPTPMDLIN-TVR 332

Query: 274 EFFPDELTSLTMIAEPGRYFVETAFILVTNVIGKRVRGEQIDYWIDDG 321
           E        L +I EPGR  +      V +V G +  G + ++ + DG
Sbjct: 333 ELVLSR--DLNLIIEPGRSLIANTCCFVNHVTGVKTNGTK-NFIVIDG 377


>AT3G14390.1 | Symbols:  | diaminopimelate decarboxylase, putative /
           DAP carboxylase, putative | chr3:4806771-4808954 FORWARD
          Length = 484

 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 130/303 (42%), Gaps = 24/303 (7%)

Query: 38  LYSLIKSISDNQEEAE--PFYLIDLGVVIRLMDKWNQSLPNVKPF--YAVKCNTEPALLL 93
           LY     + D  E  E  PFYL     + R ++ + ++L  V     YA+K N    +L 
Sbjct: 75  LYCEGTKVEDIMESVERRPFYLYSKPQITRNLEAYKEALEGVSSVIGYAIKANNNLKILE 134

Query: 94  SLATLGANFDCASQAEIETILGLGVNPDRIVYANPCKSASHIKYAARVGVNL---TTFDS 150
            L +LG      S  E+   L  G +P + ++    KS   +  AA+ GV +   + FD 
Sbjct: 135 HLRSLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKSLEDLVLAAQEGVFVNVDSEFDL 194

Query: 151 KQEIDKIKKWHPKCELLLRLK--VPSENSSWRSFGN---KYGALTEEVASLLQH--ANQA 203
              ++  +    +  +LLR+   V  +   + + GN   K+G   E++   L    A+  
Sbjct: 195 NNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDQVKAHPK 254

Query: 204 GLKVVGVSFHVGSIASDPQVYHSAIATARFAFDTAIKLEMPAMHILNIGGG-----FRAN 258
            LK+VG   H+GS  +   ++  A A     +   I+ +   +  LNIGGG     + A 
Sbjct: 255 ELKLVGAHCHLGSTITKVDIFRDA-AVLMIEYIDEIRRQGFEVSYLNIGGGLGIDYYHAG 313

Query: 259 PLFDEIGKTVNDSVQEFFPDELTSLTMIAEPGRYFVETAFILVTNVIGKRVRGEQIDYWI 318
            +       +N +V+E        L +I EPGR  +      V +V G +  G + ++ +
Sbjct: 314 AVLPTPMDLIN-TVRELVLSR--DLNLIIEPGRSLIANTCCFVNHVTGVKTNGTK-NFIV 369

Query: 319 DDG 321
            DG
Sbjct: 370 IDG 372