Jatropha Genome Database

JcCB0549071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0549071.10 + phase: 2 /partial
         (186 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51840.1 | Symbols: ACX4, ATSCX, ATG6 | ACX4 (ACYL-COA OXIDAS...   303   3e-83
AT3G45300.1 | Symbols: IVD, ATIVD | IVD (ISOVALERYL-COA-DEHYDROG...    77   8e-15

>AT3G51840.1 | Symbols: ACX4, ATSCX, ATG6 | ACX4 (ACYL-COA OXIDASE
           4); acyl-CoA oxidase/ oxidoreductase |
           chr3:19225653-19229008 REVERSE
          Length = 436

 Score =  303 bits (777), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 137/170 (80%), Positives = 155/170 (91%)

Query: 1   VRMKVRECMEKEVAPIMAEYWEKASFPFHVIPKLGSLRIAGGTIKGYGCPGMSLAGSAIA 60
           +R KVRECMEKEVAPIM EYWEKA FPFH+ PKLG++ +AGG+IKGYGCPG+S+  +AIA
Sbjct: 62  IRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIA 121

Query: 61  TAEVARVDASCSTFILVHSSLAMLTIALCGSEVQKQKYLPSLAQLSTIACWALTEPDYGS 120
           TAE+ARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQL+T+ACWALTEPD GS
Sbjct: 122 TAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGS 181

Query: 121 DASALKTTANKVEGGWVLEGQKRWIGNSTFADLLVIFARNTSTNQINGYV 170
           DAS L TTA KVEGGW + GQKRWIGNSTFADLL+IFARNT+TNQING++
Sbjct: 182 DASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFI 231


>AT3G45300.1 | Symbols: IVD, ATIVD | IVD
           (ISOVALERYL-COA-DEHYDROGENASE); ATP binding /
           isovaleryl-CoA dehydrogenase | chr3:16621659-16624848
           REVERSE
          Length = 409

 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 61/114 (53%)

Query: 59  IATAEVARVDASCSTFILVHSSLAMLTIALCGSEVQKQKYLPSLAQLSTIACWALTEPDY 118
           IA  E++R   S +     HS+L +  +   G+  QK+KYLP L     +   A++EP+ 
Sbjct: 99  IAMEEISRASGSVALSYGAHSNLCINQLVRNGTAAQKEKYLPKLISGEHVGALAMSEPNA 158

Query: 119 GSDASALKTTANKVEGGWVLEGQKRWIGNSTFADLLVIFARNTSTNQINGYVSY 172
           GSD   +K  A KV+GG++L G K W  N   A+ LV++A+  +     G  ++
Sbjct: 159 GSDVVGMKCKAEKVDGGYILNGNKMWCTNGPSAETLVVYAKTDTKAGSKGITAF 212