Jatropha Genome Database
- JcCB0548251.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0548251.10 + phase: 1 /pseudo/partial
(228 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G62980.1 | Symbols: TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE... 354 2e-98
AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRH1 (GRR1-LIKE PROT... 288 2e-78
AT1G12820.1 | Symbols: AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); au... 252 1e-67
AT3G26810.1 | Symbols: AFB2 | AFB2 (AUXIN SIGNALING F-BOX 2); au... 245 2e-65
AT5G49980.1 | Symbols: AFB5 | AFB5 (Auxin F-Box protein 5); ubiq... 203 9e-53
AT4G24390.1 | Symbols: | F-box family protein (FBX14) | chr4:12... 189 9e-49
AT4G24390.2 | Symbols: | F-box family protein (FBX14) | chr4:12... 189 9e-49
AT2G39940.1 | Symbols: COI1 | COI1 (CORONATINE INSENSITIVE 1); p... 81 5e-16
>AT3G62980.1 | Symbols: TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE
1); auxin binding / protein binding / ubiquitin-protein
ligase | chr3:23273479-23276181 REVERSE
Length = 594
Score = 354 bits (909), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 167/218 (76%), Positives = 192/218 (88%)
Query: 1 SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFS 60
SEVSFSALERLV RCPNL++L+LNR VPL++LA +L RAPQL ELGTG Y++E+RPDV+S
Sbjct: 196 SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255
Query: 61 SLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIKLVSQCQS 120
LS A SGCKEL+ LSGFWD VP YLPA+Y +CS LT+LNLSYAT+QS D++KL+ QC
Sbjct: 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK 315
Query: 121 LQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKLQ 180
LQRLWVLDYIED GLE LA+ CKDLRELRVFPSEPF +EPNV+LTEQGLVSVS GCPKL+
Sbjct: 316 LQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE 375
Query: 181 SVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPD 218
SVLYFC QMTN ALIT+ARNRPNMTRFRLCI+EP+ PD
Sbjct: 376 SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413
>AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRH1 (GRR1-LIKE PROTEIN
1); auxin binding / protein binding / ubiquitin-protein
ligase | chr4:1405108-1407057 REVERSE
Length = 585
Score = 288 bits (738), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 137/218 (62%), Positives = 174/218 (79%)
Query: 1 SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFS 60
SEV S LERLV R PNL++L+LN V LD L ++L APQL ELGTG+++++L+P+ FS
Sbjct: 192 SEVKISDLERLVSRSPNLKSLKLNPAVTLDGLVSLLRCAPQLTELGTGSFAAQLKPEAFS 251
Query: 61 SLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIKLVSQCQS 120
LS AFS CK+L+SLSG WDV+P YLPA+Y +C GLTSLNLSYAT++ PD+++L+ +C
Sbjct: 252 KLSEAFSNCKQLQSLSGLWDVLPEYLPALYSVCPGLTSLNLSYATVRMPDLVELLRRCSK 311
Query: 121 LQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKLQ 180
LQ+LWV+D IED GLEA+A++CK+LRELRVFPSEP N+ LTEQGLV VS+GC KL+
Sbjct: 312 LQKLWVMDLIEDKGLEAVASYCKELRELRVFPSEPDLDATNIPLTEQGLVFVSKGCRKLE 371
Query: 181 SVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPD 218
SVLYFC Q TN AL T+AR RPN+ FRLC++EP PD
Sbjct: 372 SVLYFCVQFTNAALFTIARKRPNLKCFRLCVIEPFAPD 409
>AT1G12820.1 | Symbols: AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); auxin
binding / ubiquitin-protein ligase |
chr1:4368879-4370780 REVERSE
Length = 577
Score = 252 bits (644), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 129/224 (57%), Positives = 157/224 (70%), Gaps = 2/224 (0%)
Query: 1 SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFS 60
E + +ALERLV R PNL++L+LNR VPLD LA ++S APQLV+LG G+Y +E P+ F+
Sbjct: 191 GETNVAALERLVARSPNLKSLKLNRAVPLDALARLMSCAPQLVDLGVGSYENEPDPESFA 250
Query: 61 SLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYAT-IQSPDVIKLVSQCQ 119
L A L+SLSGF +V P LPA YPIC L SLNLSYA IQ +IKL+ C+
Sbjct: 251 KLMTAIKKYTSLRSLSGFLEVAPLCLPAFYPICQNLISLNLSYAAEIQGNHLIKLIQLCK 310
Query: 120 SLQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEP-NVSLTEQGLVSVSEGCPK 178
LQRLW+LD I D GL +A CK+L+ELRVFPS+ E N S+TE GLV++S GCPK
Sbjct: 311 RLQRLWILDSIGDKGLAVVAATCKELQELRVFPSDVHGEEDNNASVTEVGLVAISAGCPK 370
Query: 179 LQSVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPDTPPF 222
L S+LYFC QMTN ALI VA+N PN RFRLCI+EP PD F
Sbjct: 371 LHSILYFCKQMTNAALIAVAKNCPNFIRFRLCILEPHKPDHITF 414
>AT3G26810.1 | Symbols: AFB2 | AFB2 (AUXIN SIGNALING F-BOX 2); auxin
binding / ubiquitin-protein ligase |
chr3:9868342-9870464 FORWARD
Length = 575
Score = 245 bits (625), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 119/219 (54%), Positives = 154/219 (70%), Gaps = 2/219 (0%)
Query: 1 SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFS 60
E + ALERLV R PNL++L+LNR VPLD LA +++ APQ+V+LG G+Y ++ + +
Sbjct: 191 GETNLVALERLVARSPNLKSLKLNRAVPLDALARLMACAPQIVDLGVGSYENDPDSESYL 250
Query: 61 SLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYAT-IQSPDVIKLVSQCQ 119
L C L+SLSGF + P L A +PIC LTSLNLSYA I +IKL+ C+
Sbjct: 251 KLMAVIKKCTSLRSLSGFLEAAPHCLSAFHPICHNLTSLNLSYAAEIHGSHLIKLIQHCK 310
Query: 120 SLQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKL 179
LQRLW+LD I D GLE +A+ CK+L+ELRVFPS+ N ++TE+GLV++S GCPKL
Sbjct: 311 KLQRLWILDSIGDKGLEVVASTCKELQELRVFPSDLLG-GGNTAVTEEGLVAISAGCPKL 369
Query: 180 QSVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPD 218
S+LYFC QMTN AL+TVA+N PN RFRLCI+EP PD
Sbjct: 370 HSILYFCQQMTNAALVTVAKNCPNFIRFRLCILEPNKPD 408
>AT5G49980.1 | Symbols: AFB5 | AFB5 (Auxin F-Box protein 5);
ubiquitin-protein ligase | chr5:20334420-20336531
REVERSE
Length = 619
Score = 203 bits (516), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 146/223 (65%), Gaps = 13/223 (5%)
Query: 3 VSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYS------SELRP 56
++F ALE LV R P L+ LRLNR V L L +L APQL LGTG++S SE P
Sbjct: 243 INFKALEGLVARSPFLKKLRLNRFVSLVELHRLLLGAPQLTSLGTGSFSHDEEPQSEQEP 302
Query: 57 DVFSSLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIK-LV 115
D + AF CK + LSGF +++P YLPAI+P+C+ LTSLN SYA I SPD+ K ++
Sbjct: 303 D----YAAAFRACKSVVCLSGFRELMPEYLPAIFPVCANLTSLNFSYANI-SPDMFKPII 357
Query: 116 SQCQSLQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEG 175
C LQ W LD I D GL+A+A CK+LRELR+FP +P + ++E GL ++SEG
Sbjct: 358 LNCHKLQVFWALDSICDEGLQAVAATCKELRELRIFPFDP-REDSEGPVSELGLQAISEG 416
Query: 176 CPKLQSVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPD 218
C KL+S+LYFC +MTN A+I ++ N P +T FRLCIM PD
Sbjct: 417 CRKLESILYFCQRMTNAAVIAMSENCPELTVFRLCIMGRHRPD 459
>AT4G24390.1 | Symbols: | F-box family protein (FBX14) |
chr4:12613909-12615966 REVERSE
Length = 623
Score = 189 bits (481), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 142/225 (63%), Gaps = 13/225 (5%)
Query: 1 SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYS------SEL 54
S ++F ALE LV R P L+ LR NR V L+ L ++ RAPQL LGTG++S E
Sbjct: 241 SPINFKALEELVVRSPFLKKLRTNRFVSLEELHRLMVRAPQLTSLGTGSFSPDNVPQGEQ 300
Query: 55 RPDVFSSLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIK- 113
+PD + AF CK + LSGF + P YL AI +C+ LTSLN SYA I SP ++K
Sbjct: 301 QPD----YAAAFRACKSIVCLSGFREFRPEYLLAISSVCANLTSLNFSYANI-SPHMLKP 355
Query: 114 LVSQCQSLQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVS 173
++S C +++ W LD I D GL+A+A CK+LRELR+FP +P + ++ GL ++S
Sbjct: 356 IISNCHNIRVFWALDSIRDEGLQAVAATCKELRELRIFPFDP-REDSEGPVSGVGLQAIS 414
Query: 174 EGCPKLQSVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPD 218
EGC KL+S+LYFC MTN A+ ++ N P +T FRLCIM PD
Sbjct: 415 EGCRKLESILYFCQNMTNGAVTAMSENCPQLTVFRLCIMGRHRPD 459
>AT4G24390.2 | Symbols: | F-box family protein (FBX14) |
chr4:12613909-12615966 REVERSE
Length = 623
Score = 189 bits (481), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 142/225 (63%), Gaps = 13/225 (5%)
Query: 1 SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYS------SEL 54
S ++F ALE LV R P L+ LR NR V L+ L ++ RAPQL LGTG++S E
Sbjct: 241 SPINFKALEELVVRSPFLKKLRTNRFVSLEELHRLMVRAPQLTSLGTGSFSPDNVPQGEQ 300
Query: 55 RPDVFSSLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIK- 113
+PD + AF CK + LSGF + P YL AI +C+ LTSLN SYA I SP ++K
Sbjct: 301 QPD----YAAAFRACKSIVCLSGFREFRPEYLLAISSVCANLTSLNFSYANI-SPHMLKP 355
Query: 114 LVSQCQSLQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVS 173
++S C +++ W LD I D GL+A+A CK+LRELR+FP +P + ++ GL ++S
Sbjct: 356 IISNCHNIRVFWALDSIRDEGLQAVAATCKELRELRIFPFDP-REDSEGPVSGVGLQAIS 414
Query: 174 EGCPKLQSVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPD 218
EGC KL+S+LYFC MTN A+ ++ N P +T FRLCIM PD
Sbjct: 415 EGCRKLESILYFCQNMTNGAVTAMSENCPQLTVFRLCIMGRHRPD 459
>AT2G39940.1 | Symbols: COI1 | COI1 (CORONATINE INSENSITIVE 1);
protein binding / ubiquitin-protein ligase |
chr2:16672848-16675486 REVERSE
Length = 592
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 114/225 (50%), Gaps = 11/225 (4%)
Query: 1 SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSEL-RPDVF 59
+++S LE + C +L ++++ L+ L A L E G+ + ++ P+ +
Sbjct: 205 AKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKY 263
Query: 60 SSLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIKLVSQCQ 119
+L C+ S G P +P ++P + + L+L YA +++ D L+ +C
Sbjct: 264 MNLVFPRKLCRLGLSYMG-----PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318
Query: 120 SLQRLWVLDYIEDIGLEALATFCKDLRELRV-FPSEPFAVEPNVSLTEQ-GLVSVSEGCP 177
+L+ L + I D GLE LA +CK L+ LR+ ++ +E L Q GL+++++GC
Sbjct: 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378
Query: 178 KLQSVLYFCHQMTNDALITVARNRPNMTRFRLCIM--EPRTPDTP 220
+L+ + + +TN++L ++ N+ FRL ++ E R D P
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423