Jatropha Genome Database

JcCB0545461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0545461.10 - phase: 0 /partial
         (264 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G48160.1 | Symbols:  | EXPRESSED IN: 23 plant structures; EXP...    79   3e-15
AT3G63070.1 | Symbols:  | PWWP domain-containing protein | chr3:...    69   3e-12
AT5G23150.1 | Symbols: HUA2 | HUA2 (ENHANCER OF AG-4 2); transcr...    57   1e-08
AT5G08230.1 | Symbols:  | PWWP domain-containing protein | chr5:...    53   2e-07

>AT2G48160.1 | Symbols:  | EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Regulation of nuclear pre-mRNA protein
           (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST
           Arabidopsis thaliana protein match is: PWWP
           domain-containing protein (TAIR:AT3G63070.1); Has 1292
           Blast hits to 1135 proteins in 175 species: Archae - 2;
           Bacteria - 174; Metazoa - 679; Fungi - 194; Plants -
           113; Viruses - 2; Other Eukaryotes - 128 (source: NCBI
           BLink). | chr2:19689784-19696584 REVERSE
          Length = 1366

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)

Query: 136 HVSTSESANFVQHSGCSTPN-HSHQKTTVCTSV--EEEKIELLVPQLAKSAG-----RWS 187
           H+STSESAN +Q++   +PN  + +K   C ++  EEEKIE  V Q  K           
Sbjct: 783 HISTSESANDMQNNSSGSPNIPTGEKKNDCDAIVKEEEKIETGVCQGQKVVSCDVQSTRE 842

Query: 188 NYAEAHAALSSFEGTLGSFDQDKGEHRSSNSHSHVVEILARHLESESSLHRRVDLFFLVD 247
           +Y +A  +L   + ++G       +       +  +EILA  LESES+L RRVDLFFLVD
Sbjct: 843 SYEDALCSLVRTKESIGRATCLAMDLMKFGVSAKAMEILAHTLESESNLKRRVDLFFLVD 902

Query: 248 SITQCSRGLKG 258
           SI QCS+GLKG
Sbjct: 903 SIAQCSKGLKG 913


>AT3G63070.1 | Symbols:  | PWWP domain-containing protein |
           chr3:23302667-23309575 FORWARD
          Length = 1347

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 69/137 (50%), Gaps = 18/137 (13%)

Query: 135 CHVSTSESANFVQHSGCSTPNHSH---QKTTVCTSVEEEKIELLVPQLAKSAGRWSNYAE 191
           C +ST+ES N +Q++   + N  +   +   V T  EE K+E    Q+ K        ++
Sbjct: 791 CRISTAESENAMQNNSYYSTNVQYGENKSLNVDTVKEESKVETGTTQVKKVVS-----SD 845

Query: 192 AHAALSSFEGTLGSFDQDK----------GEHRSSNSHSHVVEILARHLESESSLHRRVD 241
               + SFE  L S  + K           +       +  +EILA  LESES+L RRVD
Sbjct: 846 VQCTVESFETALDSLVRTKETIGRATRLAMDLAKFGVSAKAMEILAHTLESESNLQRRVD 905

Query: 242 LFFLVDSITQCSRGLKG 258
           LFFLVDSI QCS+GL G
Sbjct: 906 LFFLVDSIAQCSKGLNG 922


>AT5G23150.1 | Symbols: HUA2 | HUA2 (ENHANCER OF AG-4 2);
           transcription factor | chr5:7786173-7792080 FORWARD
          Length = 1392

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/39 (71%), Positives = 30/39 (76%)

Query: 220 SHVVEILARHLESESSLHRRVDLFFLVDSITQCSRGLKG 258
           S VVE+L R LESES  HR+VDLFFLVDSITQ S   KG
Sbjct: 810 SEVVELLIRKLESESHFHRKVDLFFLVDSITQHSHSQKG 848


>AT5G08230.1 | Symbols:  | PWWP domain-containing protein |
           chr5:2643846-2649788 REVERSE
          Length = 1445

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 10/91 (10%)

Query: 183 AGRWSNYAEAHAALSSFEGTLGSFDQDKGEHRSSNS----------HSHVVEILARHLES 232
            G  S   EA  +  +FEG + +  + K   R +             + VVE+L R LE 
Sbjct: 830 GGSLSGATEAAISRDTFEGMIETLSRTKESIRRATRVAIDCAKYGIANEVVELLIRKLEI 889

Query: 233 ESSLHRRVDLFFLVDSITQCSRGLKGKVLSL 263
           E    R+VDLFFL+DSI Q S   KG+  SL
Sbjct: 890 EPHFPRKVDLFFLLDSIIQSSHSQKGRARSL 920