Jatropha Genome Database

JcCB0545221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0545221.10 + phase: 1 /partial
         (291 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25930.1 | Symbols: ELF3, PYK20 | ELF3 (EARLY FLOWERING 3); p...    98   5e-21
AT3G21320.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    87   2e-17

>AT2G25930.1 | Symbols: ELF3, PYK20 | ELF3 (EARLY FLOWERING 3);
           protein C-terminus binding / transcription factor |
           chr2:11059459-11063178 FORWARD
          Length = 695

 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 132/312 (42%), Gaps = 63/312 (20%)

Query: 7   HKMECSAENAIGKTSFSSAKNGSQPSNNGSYLGNPPPVPVPTDSKMSPWCF--------Q 58
           HKME SAEN +G+ S    +   Q SN   +  NPP  P P       +CF         
Sbjct: 416 HKMESSAENVVGRLS---NQGHHQQSNYMPFANNPPASPAPNG-----YCFPPQPPPSGN 467

Query: 59  HSLGHQWLVPVMSPSEGLVYKPYNAPGFLGSACGGCGPFGASPMVGNFINPTYGIPPSSH 118
           H    QWL+PVMSPSEGL+YKP+      G   G  G +  +PMV     P Y       
Sbjct: 468 H---QQWLIPVMSPSEGLIYKPHPGMAHTGHYGGYYGHYMPTPMVM----PQY------- 513

Query: 119 HHQGTGFIPGVHGYFPPYGM--PVMHPAMSGSAV------EQMNYFXXXXXXXXXXXXXX 170
            H G GF P  +GYFPPYGM   +M+P  S          EQMN F              
Sbjct: 514 -HPGMGFPPPGNGYFPPYGMMPTIMNPYCSSQQQQQQQPNEQMNQFGHPGNLQNTQQQQQ 572

Query: 171 XXANFNVQHQSSCNLPNQKSGSVPQVPKFRASKDTELRGSTASSPG--ERVQGVGTVEAA 228
              N     + +     Q + S P+  K R       +GST SSP   + + G  +    
Sbjct: 573 RSDN-----EPAPQQQQQPTKSYPRARKSR-------QGSTGSSPSGPQGISGSKSFRPF 620

Query: 229 EGRDALLLFPVAPATPEGASQPQETDMP----------TRVIKVVPHNPRSATESAARIF 278
              D       AP      +                  TRVIKVVPHN + A+E+AARIF
Sbjct: 621 AAVDEDSNINNAPEQTMTTTTTTTRTTVTQTTRDGGGVTRVIKVVPHNAKLASENAARIF 680

Query: 279 KSIQAERKHKNS 290
           +SIQ ERK  +S
Sbjct: 681 QSIQEERKRYDS 692


>AT3G21320.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: ELF3 (EARLY FLOWERING 3); protein
           C-terminus binding / transcription factor
           (TAIR:AT2G25930.1); Has 39 Blast hits to 37 proteins in
           14 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi
           - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2
           (source: NCBI BLink). | chr3:7499408-7501312 REVERSE
          Length = 540

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 115/254 (45%), Gaps = 59/254 (23%)

Query: 42  PPVPVPTDSK--MSPWCFQHSL---GHQWLVPVMSPSEGLVYKPYNAPGFLGSACGGCGP 96
           P +P+P+ SK  ++P   Q  L   G+QWLVPV++ S+GLVYKP+  P         C P
Sbjct: 336 PKLPLPSISKELVTPIWPQQLLPPPGNQWLVPVITDSDGLVYKPFPGP---------CPP 386

Query: 97  FGASPMVGNFINPTYGIPPSSHHHQGTGFIPGVHGYFPPYGMPVMHPAMSGSAVEQMNYF 156
             ++ MV     P YG        +     P  H YFPP          + + V+Q N F
Sbjct: 387 SSSAFMV-----PVYGQDSLETPFRFPVSSPFSHSYFPPPN--------ARTTVDQTNPF 433

Query: 157 XXXXXXXXXXXXXXXXANFNVQHQSSCNLPNQKSGSVP-QVPKFRASKDTELRGSTASSP 215
                                Q Q   N  +  + ++P  + K + S D+++ GSTASSP
Sbjct: 434 G--------------------QFQRWSNTSSHMTQAIPFSLKKSQESNDSDIHGSTASSP 473

Query: 216 GERVQGVGTVEAAEGRDALLLFPVAPATPEGASQPQETDMPTRVIKVVPHNPRSATESAA 275
            E+             + L LFP  P       + ++  M  R IK VPHN  SA+ESAA
Sbjct: 474 PEK----------HKLEVLPLFPTEPTHQTDEYKQKQQPM-LRAIKAVPHNSTSASESAA 522

Query: 276 RIFKSIQAERKHKN 289
           RIF+ IQ ER+  +
Sbjct: 523 RIFRFIQEERRDSD 536