Jatropha Genome Database

JcCB0545081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0545081.10 + phase: 0 
         (227 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49980.1 | Symbols: AFB5 | AFB5 (Auxin F-Box protein 5); ubiq...   268   2e-72
AT4G24390.1 | Symbols:  | F-box family protein (FBX14) | chr4:12...   263   9e-71
AT4G24390.2 | Symbols:  | F-box family protein (FBX14) | chr4:12...   263   9e-71
AT3G26810.1 | Symbols: AFB2 | AFB2 (AUXIN SIGNALING F-BOX 2); au...   185   2e-47
AT1G12820.1 | Symbols: AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); au...   182   2e-46
AT3G62980.1 | Symbols: TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE...   181   3e-46
AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRH1 (GRR1-LIKE PROT...   167   6e-42
AT2G39940.1 | Symbols: COI1 | COI1 (CORONATINE INSENSITIVE 1); p...   130   5e-31

>AT5G49980.1 | Symbols: AFB5 | AFB5 (Auxin F-Box protein 5);
           ubiquitin-protein ligase | chr5:20334420-20336531
           REVERSE
          Length = 619

 Score =  268 bits (685), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 136/207 (65%), Positives = 157/207 (75%), Gaps = 8/207 (3%)

Query: 19  MREDRTEMSEDDN--RSPPSDSVTNSDLSSNKTQXXXXXXXXXXXXXXIPEYQAPYPDQV 76
           M +DR+EMSEDD+  +SPP D      L S                         +PD V
Sbjct: 1   MTQDRSEMSEDDDDQQSPPLD------LPSTAIADPCSSSSSPNKSRNCISNSQTFPDHV 54

Query: 77  LENVLENVLCFLTSRRDRNAASLVCRSWYRVEALTRSELFIGNCYAVSPQRATARFARIR 136
           LENVLENVL FL SR DRNAASLVC+SW+RVEALTRSE+FIGNCYA+SP R T RF R+R
Sbjct: 55  LENVLENVLQFLDSRCDRNAASLVCKSWWRVEALTRSEVFIGNCYALSPARLTQRFKRVR 114

Query: 137 SLTLKGKPRFADFNLMPPRWGAHFAPWVSSMAKAYPWLEKVHLKRMTVTDDDLALLAESF 196
           SL LKGKPRFADFNLMPP WGA+FAPWVS+MA+AYP LEKV LKRM VTDDDLALLA+SF
Sbjct: 115 SLVLKGKPRFADFNLMPPDWGANFAPWVSTMAQAYPCLEKVDLKRMFVTDDDLALLADSF 174

Query: 197 LGFKELVLVCCDGFGTSGLAVVASRCR 223
            GFKEL+LVCC+GFGTSG+++VA++CR
Sbjct: 175 PGFKELILVCCEGFGTSGISIVANKCR 201


>AT4G24390.1 | Symbols:  | F-box family protein (FBX14) |
           chr4:12613909-12615966 REVERSE
          Length = 623

 Score =  263 bits (671), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 122/153 (79%), Positives = 134/153 (87%)

Query: 71  PYPDQVLENVLENVLCFLTSRRDRNAASLVCRSWYRVEALTRSELFIGNCYAVSPQRATA 130
           P PD VLENVLENVL FLTSR DRNA SLVCRSWYRVEA TR E+FIGNCY++SP R   
Sbjct: 49  PCPDHVLENVLENVLQFLTSRCDRNAVSLVCRSWYRVEAQTRLEVFIGNCYSLSPARLIH 108

Query: 131 RFARIRSLTLKGKPRFADFNLMPPRWGAHFAPWVSSMAKAYPWLEKVHLKRMTVTDDDLA 190
           RF R+RSL LKGKPRFADFNLMPP WGA F+PWV++ AKAYPWLEKVHLKRM VTDDDLA
Sbjct: 109 RFKRVRSLVLKGKPRFADFNLMPPNWGAQFSPWVAATAKAYPWLEKVHLKRMFVTDDDLA 168

Query: 191 LLAESFLGFKELVLVCCDGFGTSGLAVVASRCR 223
           LLAESF GFKEL LVCC+GFGTSG+A+VA++CR
Sbjct: 169 LLAESFPGFKELTLVCCEGFGTSGIAIVANKCR 201


>AT4G24390.2 | Symbols:  | F-box family protein (FBX14) |
           chr4:12613909-12615966 REVERSE
          Length = 623

 Score =  263 bits (671), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 122/153 (79%), Positives = 134/153 (87%)

Query: 71  PYPDQVLENVLENVLCFLTSRRDRNAASLVCRSWYRVEALTRSELFIGNCYAVSPQRATA 130
           P PD VLENVLENVL FLTSR DRNA SLVCRSWYRVEA TR E+FIGNCY++SP R   
Sbjct: 49  PCPDHVLENVLENVLQFLTSRCDRNAVSLVCRSWYRVEAQTRLEVFIGNCYSLSPARLIH 108

Query: 131 RFARIRSLTLKGKPRFADFNLMPPRWGAHFAPWVSSMAKAYPWLEKVHLKRMTVTDDDLA 190
           RF R+RSL LKGKPRFADFNLMPP WGA F+PWV++ AKAYPWLEKVHLKRM VTDDDLA
Sbjct: 109 RFKRVRSLVLKGKPRFADFNLMPPNWGAQFSPWVAATAKAYPWLEKVHLKRMFVTDDDLA 168

Query: 191 LLAESFLGFKELVLVCCDGFGTSGLAVVASRCR 223
           LLAESF GFKEL LVCC+GFGTSG+A+VA++CR
Sbjct: 169 LLAESFPGFKELTLVCCEGFGTSGIAIVANKCR 201


>AT3G26810.1 | Symbols: AFB2 | AFB2 (AUXIN SIGNALING F-BOX 2); auxin
           binding / ubiquitin-protein ligase |
           chr3:9868342-9870464 FORWARD
          Length = 575

 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 82/154 (53%), Positives = 116/154 (75%), Gaps = 4/154 (2%)

Query: 72  YPDQVLENVLENVLCFLTSRRDRNAASLVCRSWYRVEALTRSELFIGNCYAVSPQRATAR 131
           +PD+V+E+V +    F+TS +DRNA SLVC+SWY++E  +R ++FIGNCYA++P+R   R
Sbjct: 4   FPDEVIEHVFD----FVTSHKDRNAISLVCKSWYKIERYSRQKVFIGNCYAINPERLLRR 59

Query: 132 FARIRSLTLKGKPRFADFNLMPPRWGAHFAPWVSSMAKAYPWLEKVHLKRMTVTDDDLAL 191
           F  ++SLTLKGKP FADFNL+P  WG    PW+ ++A++   LE++ LKRM VTD+ L L
Sbjct: 60  FPCLKSLTLKGKPHFADFNLVPHEWGGFVLPWIEALARSRVGLEELRLKRMVVTDESLEL 119

Query: 192 LAESFLGFKELVLVCCDGFGTSGLAVVASRCRYV 225
           L+ SF+ FK LVLV C+GF T GLA +A+ CR++
Sbjct: 120 LSRSFVNFKSLVLVSCEGFTTDGLASIAANCRHL 153


>AT1G12820.1 | Symbols: AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); auxin
           binding / ubiquitin-protein ligase |
           chr1:4368879-4370780 REVERSE
          Length = 577

 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 80/154 (51%), Positives = 114/154 (74%), Gaps = 4/154 (2%)

Query: 72  YPDQVLENVLENVLCFLTSRRDRNAASLVCRSWYRVEALTRSELFIGNCYAVSPQRATAR 131
           +PD+V+E+V +    F+ S +DRN+ SLVC+SW+++E  +R E+FIGNCYA++P+R   R
Sbjct: 4   FPDEVIEHVFD----FVASHKDRNSISLVCKSWHKIERFSRKEVFIGNCYAINPERLIRR 59

Query: 132 FARIRSLTLKGKPRFADFNLMPPRWGAHFAPWVSSMAKAYPWLEKVHLKRMTVTDDDLAL 191
           F  ++SLTLKGKP FADFNL+P  WG    PW+ ++A++   LE++ LKRM VTD+ L L
Sbjct: 60  FPCLKSLTLKGKPHFADFNLVPHEWGGFVHPWIEALARSRVGLEELRLKRMVVTDESLDL 119

Query: 192 LAESFLGFKELVLVCCDGFGTSGLAVVASRCRYV 225
           L+ SF  FK LVLV C+GF T GLA +A+ CR++
Sbjct: 120 LSRSFANFKSLVLVSCEGFTTDGLASIAANCRHL 153


>AT3G62980.1 | Symbols: TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE
           1); auxin binding / protein binding / ubiquitin-protein
           ligase | chr3:23273479-23276181 REVERSE
          Length = 594

 Score =  181 bits (459), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 81/146 (55%), Positives = 105/146 (71%)

Query: 78  ENVLENVLCFLTSRRDRNAASLVCRSWYRVEALTRSELFIGNCYAVSPQRATARFARIRS 137
           E VLE+V  F+   +DRN+ SLVC+SWY +E   R ++FIGNCYAVSP     RF ++RS
Sbjct: 11  EEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRS 70

Query: 138 LTLKGKPRFADFNLMPPRWGAHFAPWVSSMAKAYPWLEKVHLKRMTVTDDDLALLAESFL 197
           + LKGKP FADFNL+P  WG +  PW+ +M+ +Y WLE++ LKRM VTDD L L+A+SF 
Sbjct: 71  VELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFK 130

Query: 198 GFKELVLVCCDGFGTSGLAVVASRCR 223
            FK LVL  C+GF T GLA +A+ CR
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIAATCR 156


>AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRH1 (GRR1-LIKE PROTEIN
           1); auxin binding / protein binding / ubiquitin-protein
           ligase | chr4:1405108-1407057 REVERSE
          Length = 585

 Score =  167 bits (422), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 77/145 (53%), Positives = 100/145 (68%)

Query: 79  NVLENVLCFLTSRRDRNAASLVCRSWYRVEALTRSELFIGNCYAVSPQRATARFARIRSL 138
            VLE++L F+ S  DRN+ SLVC+SW+  E  TR  +F+GNCYAVSP   T RF  +RSL
Sbjct: 8   KVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCYAVSPAAVTRRFPEMRSL 67

Query: 139 TLKGKPRFADFNLMPPRWGAHFAPWVSSMAKAYPWLEKVHLKRMTVTDDDLALLAESFLG 198
           TLKGKP FAD+NL+P  WG +  PW+ +MA     LE++ +KRM VTD+ L  +A SF  
Sbjct: 68  TLKGKPHFADYNLVPDGWGGYAWPWIEAMAAKSSSLEEIRMKRMVVTDECLEKIAASFKD 127

Query: 199 FKELVLVCCDGFGTSGLAVVASRCR 223
           FK LVL  C+GF T G+A +A+ CR
Sbjct: 128 FKVLVLTSCEGFSTDGIAAIAATCR 152


>AT2G39940.1 | Symbols: COI1 | COI1 (CORONATINE INSENSITIVE 1);
           protein binding / ubiquitin-protein ligase |
           chr2:16672848-16675486 REVERSE
          Length = 592

 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 77  LENVLENVLCFLTSRRDRNAASLVCRSWYRVEALTRSELFIGNCYAVSPQRATARFARIR 136
           +++V+E V+ ++T  +DR++ASLVCR W+++++ TR  + +  CY  +P R + RF  +R
Sbjct: 17  VDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLR 76

Query: 137 SLTLKGKPRFADFNLMPPRWGAHFAPWVSSMAKAYPWLEKVHLKRMTVTDDDLALLAESF 196
           SL LKGKPR A FNL+P  WG +  PWV+ ++     L+ VH +RM V+D DL  LA++ 
Sbjct: 77  SLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKAR 136

Query: 197 L-GFKELVLVCCDGFGTSGLAVVASRCRYV 225
               + L L  C GF T GL  + + CR +
Sbjct: 137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKI 166