Jatropha Genome Database

JcCB0544161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0544161.10 + phase: 0 
         (443 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21200.1 | Symbols:  | transcription factor | chr1:7421483-74...   440   e-124
AT1G76870.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   327   8e-90
AT3G10040.1 | Symbols:  | transcription factor | chr3:3096580-30...   155   4e-38

>AT1G21200.1 | Symbols:  | transcription factor |
           chr1:7421483-7422814 FORWARD
          Length = 443

 Score =  440 bits (1131), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 254/454 (55%), Positives = 320/454 (70%), Gaps = 27/454 (5%)

Query: 1   MEGNLSRGCML-PGGSPFGGLDLEGAVRIHHQTQYPHAIHNQQRPIHRQGSSVHPSIHEG 59
           M+GN  +G ++  G S +GG DL+G++R+HHQ        NQQ   HR   +  P +HEG
Sbjct: 1   MDGNFPQGGVVRSGASSYGGFDLQGSMRVHHQDSM-----NQQ---HRHNPNSRP-LHEG 51

Query: 60  FPLTIGALNNSD----QTISKTNYNKGEKMKNSASDEDEPSYTEDDGNG-HSEGK---KG 111
            P T+      D    Q +S +   K E+ KNS SD+DEPS+TE+ G+G H+E     KG
Sbjct: 52  LPFTMVTGQTCDHHQNQNMSMSEQQKAEREKNSVSDDDEPSFTEEGGDGVHNEANRSTKG 111

Query: 112 LPWQRVKWTDKMVRLLITAVSYIGEDMSSDGDGGVRRKLAILQKKGKWKLISKVMAERGF 171
            PWQRVKWTDKMV+LLITAVSYIG+D S D     RRK A+LQKKGKWK +SKVMAERG+
Sbjct: 112 SPWQRVKWTDKMVKLLITAVSYIGDDSSIDSS--SRRKFAVLQKKGKWKSVSKVMAERGY 169

Query: 172 HVSRQQCEDKFNDLNKRYKKLNDMLGRGTSCEVVENPALLVHIDYLTEKEKDDVRKILSS 231
           HVS QQCEDKFNDLNKRYKKLNDMLGRGTSC+VVENPALL  I YL +KEKDDVRKI+SS
Sbjct: 170 HVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDSIGYLNDKEKDDVRKIMSS 229

Query: 232 KHLFYEEMCSYHNSNRLHLPHDPALQHSLQLALRSKDDHDNDDIQRNQKYDLDEDDQEVE 291
           KHLFYEEMCSYHN NRLHLPHD ALQ SLQLALRS+DDHDNDD +++Q  DLD++D + +
Sbjct: 230 KHLFYEEMCSYHNGNRLHLPHDLALQRSLQLALRSRDDHDNDDSRKHQMEDLDDEDHDGD 289

Query: 292 TDDHDEFEEKHPSHGNDR-GIYGVLGGSMKRLRHGRGCKDSCFWNPSQ----DGNKGSYP 346
            D+HDE+EE+H ++G+ R   YG  GG +K++R     +D    +PS     + NK S P
Sbjct: 290 GDEHDEYEEQHYAYGDCRVNHYGGGGGPLKKIRPSLSHEDGD--HPSHVNSLECNKVSLP 347

Query: 347 HLQIAQVDMNQMSTESTKAAWLHKQWMESQTXXXXXXXXXXXXXXXXXXXXRFKWKRFSR 406
            +  +Q D+NQ   ES +A  + KQWMES+T                    RF+W+RFS+
Sbjct: 348 QIPFSQADVNQGGAESGRAGSVQKQWMESRTLQLEEQKLQIQVELLELEKQRFRWQRFSK 407

Query: 407 KRDHELEKLRVENERMKLENERIALELKRKEMGI 440
           KRD ELE++R+ENERMKLEN+R+ LELK++E+G+
Sbjct: 408 KRDQELERMRMENERMKLENDRMGLELKQRELGV 441


>AT1G76870.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 16 plant
           structures; EXPRESSED DURING: 11 growth stages; BEST
           Arabidopsis thaliana protein match is: transcription
           factor (TAIR:AT1G21200.1); Has 324 Blast hits to 269
           proteins in 64 species: Archae - 0; Bacteria - 2;
           Metazoa - 125; Fungi - 12; Plants - 63; Viruses - 0;
           Other Eukaryotes - 122 (source: NCBI BLink). |
           chr1:28857250-28858407 FORWARD
          Length = 385

 Score =  327 bits (839), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 186/365 (50%), Positives = 233/365 (63%), Gaps = 32/365 (8%)

Query: 77  TNYNKGEKMKNSASDEDEPSYTEDDGNGHSEGKKGLPWQRVKWTDKMVRLLITAVSYIGE 136
           T +N  ++ K S S++DE      DG   S  K+  PWQRVKW DKMV+L+ITA+SYIGE
Sbjct: 48  TRHNNVDRGKKSMSEDDELCLLSSDGQNKS--KENSPWQRVKWMDKMVKLMITALSYIGE 105

Query: 137 DMSSDGDGGVRRKLAILQKKGKWKLISKVMAERGFHVSRQQCEDKFNDLNKRYKKLNDML 196
           D  SD      +K A+LQKKGKW+ +SKVM ERG+HVS QQCEDKFNDLNKRYKKLN+ML
Sbjct: 106 DSGSD------KKFAVLQKKGKWRSVSKVMDERGYHVSPQQCEDKFNDLNKRYKKLNEML 159

Query: 197 GRGTSCEVVENPALLVHIDYLTEKEKDDVRKILSSKHLFYEEMCSYHNSNRLHLPHDPAL 256
           GRGTSCEVVENP+LL  IDYL EKEKD+VR+I+SSKHLFYEEMCSYHN NRLHLPHDPA+
Sbjct: 160 GRGTSCEVVENPSLLDKIDYLNEKEKDEVRRIMSSKHLFYEEMCSYHNGNRLHLPHDPAV 219

Query: 257 QHSLQL-ALRSKDDHDNDDIQRNQKYDLDEDDQEVETDDHDEFEEKHPSHGNDRGIYGVL 315
           Q SL L  L S+DDHDND                 E   H   +        +     + 
Sbjct: 220 QRSLHLITLGSRDDHDND-----------------EHGKHQNEDLDDDDDYEEDHDGALS 262

Query: 316 GGSMKRLRHGRGCKDSCFWNPSQDGNKGSYPHLQIAQVDMNQ-MSTESTKAAWLHKQWME 374
              +KRLR  +  +D    N   D      P L  +Q D+N+ +S +S KAA L +Q +E
Sbjct: 263 DRPLKRLRQSQSHEDVGHPNKGYD-----VPCLPRSQADVNRGISLDSRKAAGLQRQQIE 317

Query: 375 SQTXXXXXXXXXXXXXXXXXXXXRFKWKRFSRKRDHELEKLRVENERMKLENERIALELK 434
           S++                    +FKW+ FS++R+ +L K+R+ENERMKLENER++LELK
Sbjct: 318 SKSLELEGRKLQIQAEMMELERQQFKWEVFSKRREQKLAKMRMENERMKLENERMSLELK 377

Query: 435 RKEMG 439
           R E+G
Sbjct: 378 RIELG 382


>AT3G10040.1 | Symbols:  | transcription factor |
           chr3:3096580-3097875 REVERSE
          Length = 431

 Score =  155 bits (393), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 120/175 (68%), Gaps = 13/175 (7%)

Query: 106 SEGKKGLP-WQRVKWTDKMVRLLITAVSYIGEDMSSD----------GDGGVRRKLAILQ 154
           ++GK+ L  W R+KWTD MVRLLI AV YIG++   +          G GG      +LQ
Sbjct: 92  TDGKRKLSQWHRMKWTDTMVRLLIMAVFYIGDEAGLNDPVDAKKKTGGGGGGGGGGGMLQ 151

Query: 155 KKGKWKLISKVMAERGFHVSRQQCEDKFNDLNKRYKKLNDMLGRGTSCEVVENPALLVHI 214
           KKGKWK +S+ M E+GF VS QQCEDKFNDLNKRYK++ND+LG+G +C VVEN  LL  +
Sbjct: 152 KKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGIACRVVENQGLLESM 211

Query: 215 DYLTEKEKDDVRKILSSKHLFYEEMCSYHNSNRLHLPHD--PALQHSLQLALRSK 267
           D+LT K KD+V+K+L+SKHLF+ EMC+YHNS      HD  P  Q+ + + + S+
Sbjct: 212 DHLTPKLKDEVKKLLNSKHLFFREMCAYHNSCGHLGGHDQQPPQQNPISIPIPSQ 266