Jatropha Genome Database

JcCB0543811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0543811.10 + phase: 0 /partial
         (148 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23250.1 | Symbols:  | succinyl-CoA ligase (GDP-forming) alph...   209   7e-55
AT5G23250.2 | Symbols:  | succinyl-CoA ligase (GDP-forming) alph...   207   1e-54
AT5G08300.1 | Symbols:  | succinyl-CoA ligase (GDP-forming) alph...   204   2e-53

>AT5G23250.1 | Symbols:  | succinyl-CoA ligase (GDP-forming)
           alpha-chain, mitochondrial, putative / succinyl-CoA
           synthetase, alpha chain, putative / SCS-alpha, putative
           | chr5:7830460-7832491 FORWARD
          Length = 341

 Score =  209 bits (531), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 101/117 (86%), Positives = 103/117 (88%)

Query: 27  EHLGLPVFNTVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 86
           EHLGLPVFNTVAEAKAETKANASVIYVP PF            LDL+VCITEGIPQHDMV
Sbjct: 91  EHLGLPVFNTVAEAKAETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMV 150

Query: 87  RVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 143
           RVKAALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG+IGIVSRSGTLTYEAV
Sbjct: 151 RVKAALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAV 207


>AT5G23250.2 | Symbols:  | succinyl-CoA ligase (GDP-forming)
           alpha-chain, mitochondrial, putative / succinyl-CoA
           synthetase, alpha chain, putative / SCS-alpha, putative
           | chr5:7830460-7832265 FORWARD
          Length = 297

 Score =  207 bits (528), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/117 (86%), Positives = 103/117 (88%)

Query: 27  EHLGLPVFNTVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 86
           EHLGLPVFNTVAEAKAETKANASVIYVP PF            LDL+VCITEGIPQHDMV
Sbjct: 91  EHLGLPVFNTVAEAKAETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMV 150

Query: 87  RVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 143
           RVKAALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG+IGIVSRSGTLTYEAV
Sbjct: 151 RVKAALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAV 207


>AT5G08300.1 | Symbols:  | succinyl-CoA ligase (GDP-forming)
           alpha-chain, mitochondrial, putative / succinyl-CoA
           synthetase, alpha chain, putative / SCS-alpha, putative
           | chr5:2667579-2669672 FORWARD
          Length = 347

 Score =  204 bits (518), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/117 (83%), Positives = 102/117 (87%)

Query: 27  EHLGLPVFNTVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 86
           EHLGLPVFN+VAEAKA+TKANASVIYVP PF            LDL+VCITEGIPQHDMV
Sbjct: 96  EHLGLPVFNSVAEAKADTKANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMV 155

Query: 87  RVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 143
           RVK ALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG+IGIVSRSGTLTYEAV
Sbjct: 156 RVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAV 212