Jatropha Genome Database
- JcCB0543221.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0543221.10 - phase: 2 /partial
(149 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | MSD1 (MANGANESE SUP... 241 2e-64
AT3G10920.2 | Symbols: MSD1 | MSD1 (MANGANESE SUPEROXIDE DISMUTA... 234 1e-62
AT3G56350.1 | Symbols: | superoxide dismutase (Mn), putative / ... 223 4e-59
AT5G23310.1 | Symbols: FSD3 | FSD3 (FE SUPEROXIDE DISMUTASE 3); ... 84 3e-17
AT5G51100.1 | Symbols: FSD2 | FSD2 (FE SUPEROXIDE DISMUTASE 2); ... 77 5e-15
AT4G25100.2 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ... 55 2e-08
AT4G25100.3 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ... 55 2e-08
AT4G25100.1 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ... 55 2e-08
AT4G25100.4 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ... 48 2e-06
>AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | MSD1 (MANGANESE
SUPEROXIDE DISMUTASE 1); metal ion binding / superoxide
dismutase | chr3:3418015-3419581 FORWARD
Length = 231
Score = 241 bits (614), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 113/147 (76%), Positives = 130/147 (88%)
Query: 1 GLKTFSLPDLANDYSALEPVISAEIMQLHHQKHHQTYITNYNKSLELLNEAMNKGDSASV 60
G++TF+LPDL DY ALEP IS EIMQ+HHQKHHQ Y+TNYN +LE L++A+NKGD+++V
Sbjct: 27 GIQTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTV 86
Query: 61 VKLQSAIKFNGGGHINHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQKISTE 120
VKLQSAIKFNGGGH+NHSIFWKNLAP EGGGEPP GSLG AID FGSLE L++K+S E
Sbjct: 87 VKLQSAIKFNGGGHVNHSIFWKNLAPSSEGGGEPPKGSLGSAIDAHFGSLEGLVKKMSAE 146
Query: 121 GAAVQGSGWVWLGLDKEAKKLVVETTA 147
GAAVQGSGWVWLGLDKE KKLVV+TTA
Sbjct: 147 GAAVQGSGWVWLGLDKELKKLVVDTTA 173
>AT3G10920.2 | Symbols: MSD1 | MSD1 (MANGANESE SUPEROXIDE DISMUTASE
1); metal ion binding / superoxide dismutase |
chr3:3418015-3419581 FORWARD
Length = 230
Score = 234 bits (598), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 112/147 (76%), Positives = 129/147 (87%), Gaps = 1/147 (0%)
Query: 1 GLKTFSLPDLANDYSALEPVISAEIMQLHHQKHHQTYITNYNKSLELLNEAMNKGDSASV 60
G++TF+LPDL DY ALEP IS EIMQ+HHQKHHQ Y+TNYN +LE L++A+NKGD+++V
Sbjct: 27 GIQTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTV 86
Query: 61 VKLQSAIKFNGGGHINHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQKISTE 120
VKLQSAIKFNGGGH+NHSIFWKNLAP EGGGEPP GSLG AID FGSLE L++K+S E
Sbjct: 87 VKLQSAIKFNGGGHVNHSIFWKNLAPSSEGGGEPPKGSLGSAIDAHFGSLEGLVKKMSAE 146
Query: 121 GAAVQGSGWVWLGLDKEAKKLVVETTA 147
GAAVQGSGW WLGLDKE KKLVV+TTA
Sbjct: 147 GAAVQGSGW-WLGLDKELKKLVVDTTA 172
>AT3G56350.1 | Symbols: | superoxide dismutase (Mn), putative /
manganese superoxide dismutase, putative |
chr3:20894155-20895625 REVERSE
Length = 241
Score = 223 bits (567), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 107/146 (73%), Positives = 119/146 (81%)
Query: 2 LKTFSLPDLANDYSALEPVISAEIMQLHHQKHHQTYITNYNKSLELLNEAMNKGDSASVV 61
+KT SLPDL Y ALEP IS EIM+LHHQKHHQTY+T YNK+L L AM GD +SVV
Sbjct: 33 MKTASLPDLPYAYDALEPAISEEIMRLHHQKHHQTYVTQYNKALNSLRSAMADGDHSSVV 92
Query: 62 KLQSAIKFNGGGHINHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQKISTEG 121
KLQS IKFNGGGH+NH+IFWKNLAPV EGGG+PPH L AID FGSLE LIQK++ EG
Sbjct: 93 KLQSLIKFNGGGHVNHAIFWKNLAPVHEGGGKPPHDPLASAIDAHFGSLEGLIQKMNAEG 152
Query: 122 AAVQGSGWVWLGLDKEAKKLVVETTA 147
AAVQGSGWVW GLD+E K+LVVETTA
Sbjct: 153 AAVQGSGWVWFGLDRELKRLVVETTA 178
>AT5G23310.1 | Symbols: FSD3 | FSD3 (FE SUPEROXIDE DISMUTASE 3);
superoxide dismutase | chr5:7850624-7852241 FORWARD
Length = 263
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 74/152 (48%), Gaps = 13/152 (8%)
Query: 1 GLKTFSLPDLANDYSALEPVISAEIMQLHHQKHHQTYITNYNKSL----ELLNEAMNKGD 56
GLKT P ALEP +S +++H KHH+ Y+ N NK L L M +
Sbjct: 51 GLKTPPYP-----LDALEPYMSRRTLEVHWGKHHRGYVDNLNKQLGKDDRLYGYTMEELI 105
Query: 57 SASVVKLQSAIKFNGGGHI-NHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQ 115
A+ +FN + NH FW+++ P GGG+ P + ID+DFGS +
Sbjct: 106 KATYNNGNPLPEFNNAAQVYNHDFFWESMQP---GGGDTPQKGVLEQIDKDFGSFTNFRE 162
Query: 116 KISTEGAAVQGSGWVWLGLDKEAKKLVVETTA 147
K + GSGWVWL L +E ++L V T+
Sbjct: 163 KFTNAALTQFGSGWVWLVLKREERRLEVVKTS 194
>AT5G51100.1 | Symbols: FSD2 | FSD2 (FE SUPEROXIDE DISMUTASE 2);
superoxide dismutase | chr5:20773357-20775635 REVERSE
Length = 305
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 23/145 (15%)
Query: 16 ALEPVISAEIMQLHHQKHHQTYITNYNKSL-----------ELLNEAMNKGDSASVVKLQ 64
ALEP +S E + H KHH+TY+ N NK + E++ + NKG+
Sbjct: 64 ALEPHMSRETLDYHWGKHHKTYVENLNKQILGTDLDALSLEEVVLLSYNKGNMLPAFN-- 121
Query: 65 SAIKFNGGGHINHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQKISTEGAAV 124
N NH FW+++ P GGG P G L I+ DFGS E+ +++ + A+
Sbjct: 122 -----NAAQAWNHEFFWESIQP---GGGGKPTGELLRLIERDFGSFEEFLERFKSAAASN 173
Query: 125 QGSGWVWLGLDKEAKKLVVETTAKP 149
GSGW WL +A +L V P
Sbjct: 174 FGSGWTWLAY--KANRLDVANAVNP 196
>AT4G25100.2 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
copper ion binding / superoxide dismutase |
chr4:12884649-12886501 REVERSE
Length = 212
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 8 PDLANDYSALEPVISAEIMQLHHQKHHQTYITNYNKSL-----------ELLNEAMNKGD 56
P A D ALEP +S + ++ H KHH+ Y+ N K + +++ N GD
Sbjct: 16 PPFALD--ALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGD 73
Query: 57 SASVVKLQSAIKFNGGGHINHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQK 116
L A N NH FW+++ P G +L ++ DF S EK ++
Sbjct: 74 ------LLPAFN-NAAQAWNHEFFWESMKPGGGGKPSGELLAL---LERDFTSYEKFYEE 123
Query: 117 ISTEGAAVQGSGWVWLGLDKEAKKLV 142
+ A G+GW WL E K+V
Sbjct: 124 FNAAAATQFGAGWAWLAYSNEKLKVV 149
>AT4G25100.3 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
copper ion binding / superoxide dismutase |
chr4:12884649-12886501 REVERSE
Length = 212
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 8 PDLANDYSALEPVISAEIMQLHHQKHHQTYITNYNKSL-----------ELLNEAMNKGD 56
P A D ALEP +S + ++ H KHH+ Y+ N K + +++ N GD
Sbjct: 16 PPFALD--ALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGD 73
Query: 57 SASVVKLQSAIKFNGGGHINHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQK 116
L A N NH FW+++ P G +L ++ DF S EK ++
Sbjct: 74 ------LLPAFN-NAAQAWNHEFFWESMKPGGGGKPSGELLAL---LERDFTSYEKFYEE 123
Query: 117 ISTEGAAVQGSGWVWLGLDKEAKKLV 142
+ A G+GW WL E K+V
Sbjct: 124 FNAAAATQFGAGWAWLAYSNEKLKVV 149
>AT4G25100.1 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
copper ion binding / superoxide dismutase |
chr4:12884649-12886501 REVERSE
Length = 212
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 8 PDLANDYSALEPVISAEIMQLHHQKHHQTYITNYNKSL-----------ELLNEAMNKGD 56
P A D ALEP +S + ++ H KHH+ Y+ N K + +++ N GD
Sbjct: 16 PPFALD--ALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGD 73
Query: 57 SASVVKLQSAIKFNGGGHINHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQK 116
L A N NH FW+++ P G +L ++ DF S EK ++
Sbjct: 74 ------LLPAFN-NAAQAWNHEFFWESMKPGGGGKPSGELLAL---LERDFTSYEKFYEE 123
Query: 117 ISTEGAAVQGSGWVWLGLDKEAKKLV 142
+ A G+GW WL E K+V
Sbjct: 124 FNAAAATQFGAGWAWLAYSNEKLKVV 149
>AT4G25100.4 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
copper ion binding / superoxide dismutase |
chr4:12884649-12885660 REVERSE
Length = 186
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 21/133 (15%)
Query: 21 ISAEIMQLHHQKHHQTYITNYNKSL-----------ELLNEAMNKGDSASVVKLQSAIKF 69
+S + ++ H KHH+ Y+ N K + +++ N GD
Sbjct: 1 MSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFN------- 53
Query: 70 NGGGHINHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQKISTEGAAVQGSGW 129
N NH FW+++ P G +L ++ DF S EK ++ + A G+GW
Sbjct: 54 NAAQAWNHEFFWESMKPGGGGKPSGELLAL---LERDFTSYEKFYEEFNAAAATQFGAGW 110
Query: 130 VWLGLDKEAKKLV 142
WL E K+V
Sbjct: 111 AWLAYSNEKLKVV 123