Jatropha Genome Database

JcCB0534371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0534371.10 - phase: 0 
         (64 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | NRAMP1 (NATURAL...    47   2e-06

>AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | NRAMP1 (NATURAL
          RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1); inorganic
          anion transmembrane transporter/ manganese ion
          transmembrane transporter/ metal ion transmembrane
          transporter | chr1:30373066-30375644 REVERSE
          Length = 532

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 1  MAGSQSVQPQFIASTG-NGSFSNAPLIENSDVDQIIVPDVTSLTFYF 46
          MA + S + QFI+S+G N SFSN+PLIENSD +QIIV +  S   +F
Sbjct: 1  MAATGSGRSQFISSSGGNRSFSNSPLIENSDSNQIIVSEKKSWKNFF 47