Jatropha Genome Database

JcCB0534201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0534201.10 - phase: 2 /partial
         (100 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43710.1 | Symbols: emb1075 | emb1075 (embryo defective 1075)...   168   5e-43

>AT1G43710.1 | Symbols: emb1075 | emb1075 (embryo defective 1075);
           carboxy-lyase/ catalytic/ pyridoxal phosphate binding |
           chr1:16486534-16488298 REVERSE
          Length = 482

 Score =  168 bits (426), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 88/100 (88%), Gaps = 1/100 (1%)

Query: 1   AHYLKDRLRDAGISAMLNELSSTVVFERPRDEEFVRRWQLACQGSIAHVVVMPNVTIEKL 60
           AHYLKDRLR+AGISAMLNELSSTVVFERP+DEEFVRRWQLACQG IAHVVVMP+VTIEKL
Sbjct: 384 AHYLKDRLREAGISAMLNELSSTVVFERPKDEEFVRRWQLACQGDIAHVVVMPSVTIEKL 443

Query: 61  DNFLNELIEKRSTWYQDGQLQSPCIATDVGSENCACALHK 100
           DNFL +L++ R  WY+DG  Q PC+A++VG+ NC C  HK
Sbjct: 444 DNFLKDLVKHRLIWYEDGS-QPPCLASEVGTNNCICPAHK 482