Jatropha Genome Database

JcCB0533111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0533111.10 + phase: 0 /partial
         (106 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57570.1 | Symbols:  | binding | chr3:21312598-21320105 FORWARD     73   4e-14

>AT3G57570.1 | Symbols:  | binding | chr3:21312598-21320105 FORWARD
          Length = 1068

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 2/94 (2%)

Query: 13  KDGFELPSRLSVSAADCILAITEALTKKNKVSSNNPKLLNSDALHRPISLVPAVSREKKA 72
           +DG+E+PSRLS+SAADC+L+IT AL K++    N PK       H+P++L P +S EKK 
Sbjct: 185 QDGYEVPSRLSLSAADCLLSITGALAKRDNTLINRPKSPTITGSHQPVALTPNIS-EKKK 243

Query: 73  KPAHKSSEESTFDMAYLLWDLIGELITLTQRLLA 106
           +P     E+S  +   +LW+ + +L  L Q L A
Sbjct: 244 RPT-SLPEDSNIETNCILWNHMEDLTRLVQCLFA 276