Jatropha Genome Database

JcCB0528831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0528831.10 - phase: 1 /partial
         (229 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01630.1 | Symbols: BRCA2B, BRCA2(V), ATBRCA2(V) | BRCA2B (BR...   121   4e-28
AT4G00020.1 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | protein...   117   5e-27
AT4G00020.2 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | protein...   117   5e-27

>AT5G01630.1 | Symbols: BRCA2B, BRCA2(V), ATBRCA2(V) | BRCA2B
           (BRCA2-LIKE B); protein binding / single-stranded DNA
           binding | chr5:235117-240911 REVERSE
          Length = 1155

 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/233 (39%), Positives = 126/233 (54%), Gaps = 20/233 (8%)

Query: 4   DSDNVC------GFTNSLFSTGSGKSVNISSAGLVRAKTLLGLENNNVSNFQGFQHPRKS 57
           DSDNV       G  NSLF T S K VN+SSAGL RAK LLGLE ++++   GF H  +S
Sbjct: 152 DSDNVLPRESGFGVPNSLFQTASNKKVNVSSAGLARAKALLGLEEDDLN---GFNHVNQS 208

Query: 58  PKVNEQNEWQDLSYLRMKEDMDNSGMQSVS-TPSLIGSKLSNAVTPNLLQSELHNSTPKP 116
               +Q+ W   S L+  E+ D + ++  S TP    + +S        +SE+ N + K 
Sbjct: 209 SSSLQQHGW---SGLKTHEEFDATVVKHHSGTPGQYENYVSGK------RSEILNPSLKV 259

Query: 117 PPIKFHTAGGRSLSVSSDALERAKSLLGDPDLGTFLNEDDAVDPAHTVSKVCRLSDASVM 176
           PP KF TAGG+SLSVS++AL+RA++LLGDP+LG+F ++    D   T  K  RLSD ++ 
Sbjct: 260 PPTKFQTAGGKSLSVSAEALKRARNLLGDPELGSFFDDVAGGDQFFTPQKDERLSDIAIN 319

Query: 177 REANFHSAFTYPCAAKSKHIGKSFVXXXXXXXXXXXXXXXXENIISGISLIKK 229
             +       +     +KH   SFV                EN+ SG +LIKK
Sbjct: 320 NGSVNTGYIAHEEKTSNKHTSNSFV-SPLHSSSKQFRSVNLENLASGGNLIKK 371


>AT4G00020.1 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | protein
           binding / single-stranded DNA binding | chr4:4107-10364
           REVERSE
          Length = 1151

 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/233 (39%), Positives = 127/233 (54%), Gaps = 20/233 (8%)

Query: 4   DSDNVC------GFTNSLFSTGSGKSVNISSAGLVRAKTLLGLENNNVSNFQGFQHPRKS 57
           DSDNV       G +NSLF T S K VN+SSAGL RAK LLGLE ++++   GF H  +S
Sbjct: 152 DSDNVLPRESGFGVSNSLFQTASNKKVNVSSAGLARAKALLGLEEDDLN---GFNHVNQS 208

Query: 58  PKVNEQNEWQDLSYLRMKEDMDNSGMQSVS-TPSLIGSKLSNAVTPNLLQSELHNSTPKP 116
              ++Q+ W   S L+  E+ D + ++  S TP      +S        +SE+ N + K 
Sbjct: 209 SSSSQQHGW---SGLKTHEEFDATVVKHHSGTPGQYEDYVSGK------RSEVLNPSLKV 259

Query: 117 PPIKFHTAGGRSLSVSSDALERAKSLLGDPDLGTFLNEDDAVDPAHTVSKVCRLSDASVM 176
           PP KF TAGG+SLSVS++AL+RA++LLGDP+LG+F ++    D   T  K  RLSD ++ 
Sbjct: 260 PPTKFQTAGGKSLSVSAEALKRARNLLGDPELGSFFDDVAGGDQFFTPEKDERLSDIAIN 319

Query: 177 REANFHSAFTYPCAAKSKHIGKSFVXXXXXXXXXXXXXXXXENIISGISLIKK 229
             +       +     +KH   SFV                EN+ SG +LIKK
Sbjct: 320 NGSANRGYIAHEEKTSNKHTPNSFV-SPLWSSSKQFSSVNLENLASGGNLIKK 371


>AT4G00020.2 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | protein
           binding / single-stranded DNA binding | chr4:2895-10364
           REVERSE
          Length = 1187

 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/233 (39%), Positives = 127/233 (54%), Gaps = 20/233 (8%)

Query: 4   DSDNVC------GFTNSLFSTGSGKSVNISSAGLVRAKTLLGLENNNVSNFQGFQHPRKS 57
           DSDNV       G +NSLF T S K VN+SSAGL RAK LLGLE ++++   GF H  +S
Sbjct: 152 DSDNVLPRESGFGVSNSLFQTASNKKVNVSSAGLARAKALLGLEEDDLN---GFNHVNQS 208

Query: 58  PKVNEQNEWQDLSYLRMKEDMDNSGMQSVS-TPSLIGSKLSNAVTPNLLQSELHNSTPKP 116
              ++Q+ W   S L+  E+ D + ++  S TP      +S        +SE+ N + K 
Sbjct: 209 SSSSQQHGW---SGLKTHEEFDATVVKHHSGTPGQYEDYVSGK------RSEVLNPSLKV 259

Query: 117 PPIKFHTAGGRSLSVSSDALERAKSLLGDPDLGTFLNEDDAVDPAHTVSKVCRLSDASVM 176
           PP KF TAGG+SLSVS++AL+RA++LLGDP+LG+F ++    D   T  K  RLSD ++ 
Sbjct: 260 PPTKFQTAGGKSLSVSAEALKRARNLLGDPELGSFFDDVAGGDQFFTPEKDERLSDIAIN 319

Query: 177 REANFHSAFTYPCAAKSKHIGKSFVXXXXXXXXXXXXXXXXENIISGISLIKK 229
             +       +     +KH   SFV                EN+ SG +LIKK
Sbjct: 320 NGSANRGYIAHEEKTSNKHTPNSFV-SPLWSSSKQFSSVNLENLASGGNLIKK 371