Jatropha Genome Database
- JcCB0517161.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0517161.20 + phase: 0 /partial
(217 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G77405.1 | Symbols: | INVOLVED IN: biological_process unknow... 263 8e-71
AT3G22670.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 64 6e-11
AT1G18900.2 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 6e-08
AT1G18900.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 6e-08
AT2G15630.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 53 1e-07
AT5G18390.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 51 4e-07
AT1G74580.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 8e-07
AT3G16010.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 2e-06
AT1G02060.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 47 6e-06
>AT1G77405.1 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: EMB2745 (EMBRYO
DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 13180 Blast hits
to 4377 proteins in 153 species: Archae - 4; Bacteria -
12; Metazoa - 210; Fungi - 191; Plants - 12251; Viruses
- 0; Other Eukaryotes - 512 (source: NCBI BLink). |
chr1:29087145-29088521 FORWARD
Length = 458
Score = 263 bits (671), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 126/191 (65%), Positives = 147/191 (76%), Gaps = 3/191 (1%)
Query: 27 RSFDSQLASATVTSSLLTVDLISDVFRSIPRFFFQSTRSIGRQNTTRHRSPLKQRNLKQE 86
R FD+ LAS+TV T L+SDV SIPRFFF S RSIGRQ RHRSPLKQRNL E
Sbjct: 23 RPFDAVLASSTVAKPW-TQQLVSDVLHSIPRFFFISPRSIGRQKGFRHRSPLKQRNLSDE 81
Query: 87 SCKYRDKVLVLGPAAYRDHKRVNVGLNKAMEFFYWLETHFSFAHTEMTCREMACVLARGN 146
S + R +VLVLGP AY D K+V++GL KA+EFF+W+ETHF F H E+TCR+MAC+LA+GN
Sbjct: 82 SQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFFWIETHFGFDHNEITCRDMACLLAKGN 141
Query: 147 RLDKLWQFLKDMGRRENGVGVKLVTTNTITCLIKVLGEEGLVNQALALFYRMKQYHCKPD 206
LW FL+ + RRENG V VTT +ITCL+K LGEEG V +ALA FYRMK+YHCKPD
Sbjct: 142 DFKGLWDFLRQVSRRENGKNV--VTTASITCLMKCLGEEGFVKEALATFYRMKEYHCKPD 199
Query: 207 VYAYNTIINAL 217
VYAYNTIINAL
Sbjct: 200 VYAYNTIINAL 210
>AT3G22670.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:8017771-8019459 REVERSE
Length = 562
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 106 KRVNVGLNKAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGV 165
+R + G N+A FF W + + H+ T M VL + D +W+ + +M + E
Sbjct: 140 RRFSNGWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEES- 198
Query: 166 GVKLVTTNTITCLIKVLGEEGLVNQALALFYRM-KQYHCKPDVYAYNTIINAL 217
KLVT +T++ +++ L + G N+A+ F M K Y K D A N++++AL
Sbjct: 199 --KLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDAL 249
>AT1G18900.2 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:6529778-6532360 FORWARD
Length = 860
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 115 AMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVGVKLVTTNT 174
A+ FFYWL+ F H T M L R + + + L +M R +G VT N
Sbjct: 347 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVR--DGCQPNTVTYNR 404
Query: 175 ITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIIN 215
LI G +N+A+ +F +M++ CKPD Y T+I+
Sbjct: 405 ---LIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLID 442
>AT1G18900.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:6529778-6532360 FORWARD
Length = 860
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 115 AMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVGVKLVTTNT 174
A+ FFYWL+ F H T M L R + + + L +M R +G VT N
Sbjct: 347 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVR--DGCQPNTVTYNR 404
Query: 175 ITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIIN 215
LI G +N+A+ +F +M++ CKPD Y T+I+
Sbjct: 405 ---LIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLID 442
>AT2G15630.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:6814521-6816404 FORWARD
Length = 627
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 112 LNKAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVGVKLVT 171
+++A+E FY ++ + TE TC + +L+R NR++ W F DM R E V
Sbjct: 171 VDEAIECFYLMKEKGFYPKTE-TCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVY--- 226
Query: 172 TNTITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIINA 216
T +I VL +EG + +A M+ + KP + YNT++
Sbjct: 227 --TFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQG 269
>AT5G18390.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:6090954-6092333 FORWARD
Length = 459
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 113 NKAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVGVKLVTT 172
N ++ FF W ++ S+ T M E+A LA + + +W+ LK M ++
Sbjct: 92 NDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLD-----ISG 146
Query: 173 NTITCLIKVLGEEGLVNQALALFYRM-KQYHCKPDVYAYNTIINAL 217
T+ +I+ G+ G V+QA+ LF + K C+ V YN++++AL
Sbjct: 147 ETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHAL 192
>AT1G74580.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:28020777-28023068 FORWARD
Length = 763
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 114 KAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVGVKLVTTN 173
KA+E F + F HT T R + L + + + + L DM REN VG ++
Sbjct: 22 KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDM--REN-VGNHMLEGV 78
Query: 174 TITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIINAL 217
+ + K G +G V +A+ +F RM Y C+P V++YN I++ L
Sbjct: 79 YVGAM-KNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVL 121
>AT3G16010.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:5434142-5436244 FORWARD
Length = 642
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 112 LNKAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVGVKLVT 171
+ KA++ F ++ + T T E+ L + R+D+ + F KDM R +G+ +V
Sbjct: 284 VEKALDLFEEMK-RAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLR--DGLTPDVVF 340
Query: 172 TNTITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIINAL 217
N L+ +LG+ G V + +F M + C P V +YNT+I AL
Sbjct: 341 LNN---LMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKAL 383
>AT1G02060.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:360918-363050 REVERSE
Length = 710
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 115 AMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVGVKLVTTNT 174
+ FF W+ F+H E + M L R L+ FL + RR NG VKL
Sbjct: 84 GLRFFDWVSNK-GFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGC-VKL-QDRY 140
Query: 175 ITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIINAL 217
LI+ G GL +++ LF MKQ P V +N++++ L
Sbjct: 141 FNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSIL 183