Jatropha Genome Database

JcCB0510081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0510081.10 - phase: 0 
         (118 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29965.1 | Symbols:  | 60S ribosomal protein L18A  (RPL18aA) ...   224   8e-60
AT2G34480.1 | Symbols:  | 60S ribosomal protein L18A (RPL18aB) |...   224   9e-60
AT3G14600.1 | Symbols:  | 60S ribosomal protein L18A (RPL18aC) |...   223   2e-59
AT1G29970.2 | Symbols: RPL18AA | RPL18AA (60S RIBOSOMAL PROTEIN ...   223   2e-59

>AT1G29965.1 | Symbols:  | 60S ribosomal protein L18A  (RPL18aA) |
           chr1:10498458-10499373 REVERSE
          Length = 178

 Score =  224 bits (571), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 103/115 (89%), Positives = 111/115 (96%)

Query: 4   NLIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 63
           N IFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI
Sbjct: 64  NEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 123

Query: 64  QIIKTGTIPAKLCKRESSKQFHNSKIKFPLVFKKVRPPTRKLRTTYKASRPNLFM 118
           QIIKT T+PA LCKRES+KQFHNSKIKFPLVF+KVRPPTRKL+TT+KA++PNLFM
Sbjct: 124 QIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178


>AT2G34480.1 | Symbols:  | 60S ribosomal protein L18A (RPL18aB) |
           chr2:14532916-14534161 REVERSE
          Length = 178

 Score =  224 bits (571), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 103/115 (89%), Positives = 112/115 (97%)

Query: 4   NLIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 63
           N I+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI
Sbjct: 64  NEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 123

Query: 64  QIIKTGTIPAKLCKRESSKQFHNSKIKFPLVFKKVRPPTRKLRTTYKASRPNLFM 118
           QIIKT T+PAKLCKRES+KQFHNSKIKFPLVF+KVRPP+RKL+TTYKA++PNLFM
Sbjct: 124 QIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178


>AT3G14600.1 | Symbols:  | 60S ribosomal protein L18A (RPL18aC) |
           chr3:4910773-4911933 FORWARD
          Length = 178

 Score =  223 bits (568), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 104/115 (90%), Positives = 110/115 (95%)

Query: 4   NLIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 63
           N IFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVRFPCI
Sbjct: 64  NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCI 123

Query: 64  QIIKTGTIPAKLCKRESSKQFHNSKIKFPLVFKKVRPPTRKLRTTYKASRPNLFM 118
           QIIKT T+PAKLCKRE +KQFHNSKIKFPLVF+KVRPP+RKL+TTYKAS+PNLFM
Sbjct: 124 QIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178


>AT1G29970.2 | Symbols: RPL18AA | RPL18AA (60S RIBOSOMAL PROTEIN
           L18A-1); structural constituent of ribosome |
           chr1:10498458-10501311 REVERSE
          Length = 312

 Score =  223 bits (568), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/115 (89%), Positives = 111/115 (96%)

Query: 4   NLIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 63
           N IFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI
Sbjct: 198 NEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 257

Query: 64  QIIKTGTIPAKLCKRESSKQFHNSKIKFPLVFKKVRPPTRKLRTTYKASRPNLFM 118
           QIIKT T+PA LCKRES+KQFHNSKIKFPLVF+KVRPPTRKL+TT+KA++PNLFM
Sbjct: 258 QIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 312